Discovering Gavialis gangeticus selenoproteins

Group components: Toni de Dios, Marc Gordo, Anna Llopart, Xavier Martí
Abstract Introduction Materials & Methods Results Discussion Conclusions References Acknowledgments

Selenoproteins

Machinery

Cys-homologues

 

Selenoprotein Analysis

DI1

Compared with Gallus gallus

BLAST EXONERATE PREDICTED PROTEIN T-COFFEE SECIS
Scaffold Similarity Start position End position E-value
KN323949.1 65% 420389 425977 3e-34 Structure Sequence

DI2

Compared with Gallus gallus

BLAST EXONERATE PREDICTED PROTEIN T-COFFEE SECIS
Scaffold Similarity Start position End position E-value
KN327708.1 90% 21508 33230 e-112 Structure Sequence

DI3

Compared with Homo sapiens

BLAST EXONERATE PREDICTED PROTEIN T-COFFEE SECIS
Scaffold Similarity Start position End position E-value
KN334575.1 60% 37015 102707 8e-90 Structure Sequence

GPx1

Compared with Homo sapiens

BLAST EXONERATE PREDICTED PROTEIN T-COFFEE SECIS
Scaffold Similarity Start position End position E-value
KN325303.1 52% 24515 30340 2e-54 Structure Sequence

GPx2

Compared with Homo sapiens

BLAST EXONERATE PREDICTED PROTEIN T-COFFEE SECIS
Scaffold Similarity Start position End position E-value
KN332733.1 72% 34981 37356 2e-54 Structure Sequence

GPx3

Compared with Homo sapiens

BLAST EXONERATE PREDICTED PROTEIN T-COFFEE SECIS
Scaffold Similarity Start position End position E-value
KN325192.1 53% 11948 38921 3e-28 Structure Sequence

Sel15

Compared with Homo sapiens

BLAST EXONERATE PREDICTED PROTEIN T-COFFEE SECIS
Scaffold Similarity Start position End position E-value
KN331551.1 82% 83143 130918 5e-19 Structure Sequence

SelH

Compared with Homo sapiens

BLAST EXONERATE PREDICTED PROTEIN T-COFFEE SECIS
Scaffold Similarity Start position End position E-value
KN331620.1 63% 17064 18112 3e-11 Structure Sequence

SelI

Compared with Gallus gallus

BLAST EXONERATE PREDICTED PROTEIN T-COFFEE SECIS
Scaffold Similarity Start position End position E-value
KN340711.1 64% 5267 17947 2e-37 Structure Sequence

SelK

Compared with Gallus gallus

BLAST EXONERATE PREDICTED PROTEIN T-COFFEE SECIS
Scaffold Similarity Start position End position E-value
KN339408.1 80% 2714 5998 4e-6 Structure Sequence

SelM

Compared with Homo sapiens

BLAST EXONERATE PREDICTED PROTEIN T-COFFEE SECIS
Scaffold Similarity Start position End position E-value
KN357775.1 73% 208 5648 4e-13 Structure Sequence

SelN

Compared with Gallus gallus

BLAST EXONERATE PREDICTED PROTEIN T-COFFEE SECIS
Scaffold Similarity Start position End position E-value
KN340252.1 86% 93464 108939 7e-33 Structure Sequence

SelO

Compared with Homo sapiens

BLAST EXONERATE PREDICTED PROTEIN T-COFFEE SECIS
Scaffold Similarity Start position End position E-value
KN323317.1 62% 189095 198355 e-28 Structure Sequence

SelP

Compared with Gallus gallus

BLAST EXONERATE PREDICTED PROTEIN T-COFFEE SECIS
Scaffold Similarity Start position End position E-value
KN331503.1 80% 30419 37131 2e-28 Structure Sequence

SelR1

Compared with Gallus gallus

BLAST EXONERATE PREDICTED PROTEIN T-COFFEE SECIS
Scaffold Similarity Start position End position E-value
KN328135.1 62% 9859 54028 2e-41 Structure Sequence

SelS

Compared with Gallus gallus

BLAST EXONERATE PREDICTED PROTEIN T-COFFEE SECIS
Scaffold Similarity Start position End position E-value
KN343631.1 53% 174094 180838 e-7 Structure Sequence

SelT

Compared with Gallus gallus

BLAST EXONERATE PREDICTED PROTEIN T-COFFEE SECIS
Scaffold Similarity Start position End position E-value
KN332697.1 87% 25580 33612 8e-21 Structure Sequence

SelU1

Compared with Homo sapiens

BLAST EXONERATE PREDICTED PROTEIN T-COFFEE SECIS
Scaffold Similarity Start position End position E-value
KN328551.1 75% 84072 92083 9e-20 Structure Sequence

SPS2

Compared with Homo sapiens

BLAST EXONERATE PREDICTED PROTEIN T-COFFEE SECIS
Scaffold Similarity Start position End position E-value
KN325147.1 85% 4433 26094 2e-31 Structure Sequence

TR1

Compared with Homo sapiens

BLAST EXONERATE PREDICTED PROTEIN T-COFFEE SECIS
Scaffold Similarity Start position End position E-value
KN333725.1 70% 102597 152094 2e-17 Structure Sequence

TR2

Compared with Gallus gallus

BLAST EXONERATE PREDICTED PROTEIN T-COFFEE SECIS
Scaffold Similarity Start position End position E-value
KN346354.1 63% 4231 54706 2e-23 Structure Sequence

TR3

Compared with Gallus gallus

BLAST EXONERATE PREDICTED PROTEIN T-COFFEE SECIS
Scaffold Similarity Start position End position E-value
KN347796.1 67% 57360 89451 2e-54 Structure Sequence



Machinery Analysis

eEFSec

Compared with Gallus gallus

BLAST EXONERATE PREDICTED PROTEIN T-COFFEE SECIS
Scaffold Similarity Start position End position E-value
KN328583.1 89% 1657 50943 e-127

EIF4A3

Compared with Homo sapiens

BLAST EXONERATE PREDICTED PROTEIN T-COFFEE SECIS
Scaffold Similarity Start position End position E-value
KN353580.1 97% 9377 23227 e-36

MsrA

Compared with Gallus gallus

BLAST EXONERATE PREDICTED PROTEIN T-COFFEE SECIS
Scaffold Similarity Start position End position E-value
KN339230.1 87% 43319 75367 2e-27

PSTK

Compared with Gallus gallus

BLAST EXONERATE PREDICTED PROTEIN T-COFFEE SECIS
Scaffold Similarity Start position End position E-value
KN326215.1 57% 25987 30084 6e-16

RPL30

Compared with Homo sapiens

BLAST EXONERATE PREDICTED PROTEIN T-COFFEE SECIS
Scaffold Similarity Start position End position E-value
KN359763.1 100% 9571 10617 3e-23

SARS2

Compared with Homo sapiens

BLAST EXONERATE PREDICTED PROTEIN T-COFFEE SECIS
Scaffold Similarity Start position End position E-value
KN325240.1 87% 3729 18387 7e-11

SBP2

Compared with Gallus gallus

BLAST EXONERATE PREDICTED PROTEIN T-COFFEE SECIS
Scaffold Similarity Start position End position E-value
KN340409.1 67% 2 24336 2e-76

SECp43

Compared with Homo sapiens

BLAST EXONERATE PREDICTED PROTEIN T-COFFEE SECIS
Scaffold Similarity Start position End position E-value
KN351604.1 73% 9110 85237 2e-09

SecS

Compared with Gallus gallus

BLAST EXONERATE PREDICTED PROTEIN T-COFFEE SECIS
Scaffold Similarity Start position End position E-value
KN341850.1 98% 10684 59440 2e-42

SEPSECS

Compared with Homo sapiens

BLAST EXONERATE PREDICTED PROTEIN T-COFFEE SECIS
Scaffold Similarity Start position End position E-value
KN341850.1 94% 10486 59440 6e-41

SPS1

Compared with Homo sapiens

BLAST EXONERATE PREDICTED PROTEIN T-COFFEE SECIS
Scaffold Similarity Start position End position E-value
KN331553.1 98% 172655 201393 5e-38



Cys-homologues analysis

CELF1

Compared with Homo sapiens

BLAST EXONERATE PREDICTED PROTEIN T-COFFEE SECIS
Scaffold Similarity Start position End position E-value
KN326986.1 78% 67322 148262 8e-26 Structure Sequence

ELAVL1

Compared with Homo sapiens

BLAST EXONERATE PREDICTED PROTEIN T-COFFEE SECIS
Scaffold Similarity Start position End position E-value
KN326208.1 100% 2342 100675 2e-66 Structure Sequence

G6PD

Compared with Homo sapiens

BLAST EXONERATE PREDICTED PROTEIN T-COFFEE SECIS
Scaffold Similarity Start position End position E-value
KN354991.1 83% 29 3675 6e-56

GPx4

Compared with Homo sapiens

BLAST EXONERATE PREDICTED PROTEIN T-COFFEE SECIS
Scaffold Similarity Start position End position E-value
KN350882.1 72% 167048 178702 4e-18

GPx7

Compared with Gallus gallus

BLAST EXONERATE PREDICTED PROTEIN T-COFFEE SECIS
Scaffold Similarity Start position End position E-value
KN343115.1 87% 4518 8341 e-41

GPx8

Compared with Gallus gallus

BLAST EXONERATE PREDICTED PROTEIN T-COFFEE SECIS
Scaffold Similarity Start position End position E-value
KN325713.1 90% 105789 108921 4e-48 Structure Sequence

SCLY

Compared with Homo sapiens

BLAST EXONERATE PREDICTED PROTEIN T-COFFEE SECIS
Scaffold Similarity Start position End position E-value
KN338129.1 60% 55102 71706 8e-19 Structure Sequence

SelR2

Compared with Homo sapiens

BLAST EXONERATE PREDICTED PROTEIN T-COFFEE SECIS
Scaffold Similarity Start position End position E-value
KN335858.1 67% 27975 56239 4e-15

SelR3

Compared with Homo sapiens

BLAST EXONERATE PREDICTED PROTEIN T-COFFEE SECIS
Scaffold Similarity Start position End position E-value
KN328135.1 58% 18890 54034 e-36 Structure Sequence

SelU2

Compared with Homo sapiens

BLAST EXONERATE PREDICTED PROTEIN T-COFFEE SECIS
Scaffold Similarity Start position End position E-value
KN342762.1 73% 15913 20632 2e-16

SelU3

Compared with Homo sapiens

BLAST EXONERATE PREDICTED PROTEIN T-COFFEE SECIS
Scaffold Similarity Start position End position E-value
KN328749.1 52% 177079 233872 3e-11

TTPA

Compared with Homo sapiens

BLAST EXONERATE PREDICTED PROTEIN T-COFFEE SECIS
Scaffold Similarity Start position End position E-value
KN350030.1 46% 193583 200940 2e-12

XPO1

Compared with Homo sapiens

BLAST EXONERATE PREDICTED PROTEIN T-COFFEE SECIS
Scaffold Similarity Start position End position E-value
KN325182.1 67% 72686 123403 4e-38