TBLASTN 2.2.26 [Sep-21-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= SPP00002947_2.0 # Protein # exportin 1 (XPO1) # Human (Homo sapiens) (1071 letters) Database: genome.fa 47,351 sequences; 2,188,353,730 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value KN325182.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic... 162 4e-38 KN330546.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic... 43 0.11 >KN325182.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic scaffold scaffold2033, whole genome shotgun sequence Length = 261595 Score = 162 bits (409), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 83/123 (67%), Positives = 91/123 (73%), Gaps = 26/123 (21%) Frame = +1 Query: 927 FSVVTDTSHTAGLTMHASILAYMFNLVEEGKISTSLNPGNPVNNQIFLQEYVANLLKSAF 986 +++++ S GLTMHASILAYMFNLVEEGKIST LNPGNPVNNQ+F+QEYVANLLKSAF Sbjct: 122233 YTLISFLSFFTGLTMHASILAYMFNLVEEGKISTPLNPGNPVNNQMFIQEYVANLLKSAF 122412 Query: 987 PHLQD--------------------------AQVKLFVTGLFSLNQDIPAFKEHLRDFLV 1020 PHLQ+ AQVKLFVTGLFSLNQDIPAFKEHLRDFLV Sbjct: 122413 PHLQE*VCCDFFESFIAALMFDVLISLFTFSAQVKLFVTGLFSLNQDIPAFKEHLRDFLV 122592 Query: 1021 QIK 1023 QIK Sbjct: 122593 QIK 122601 Score = 134 bits (336), Expect(2) = 1e-36, Method: Compositional matrix adjust. Identities = 76/131 (58%), Positives = 78/131 (59%), Gaps = 45/131 (34%) Frame = +3 Query: 121 EKEKVYIGKLNMILVQ-------------------------------------------- 136 +KEKVYIGKLNMILVQ Sbjct: 92280 QKEKVYIGKLNMILVQVCSSSVLFLFFMRI*KNYQYDQNNSFCASSYLGRKPYLLHCFDF 92459 Query: 137 -ILKQEWPKHWPTFISDIVGASRTSESLCQNNMVILKLLSEEVFDFSSGQITQVKSKHLK 195 ILKQEWPKHWPTFISDIVGASRTSESLCQNNMVILKLLSEEVFDFSSGQITQVK+KHLK Sbjct: 92460 QILKQEWPKHWPTFISDIVGASRTSESLCQNNMVILKLLSEEVFDFSSGQITQVKAKHLK 92639 Query: 196 DSMCNEFSQIF 206 D F F Sbjct: 92640 DR*AKHFVIFF 92672 Score = 45.8 bits (107), Expect(2) = 1e-36, Method: Compositional matrix adjust. Identities = 21/21 (100%), Positives = 21/21 (100%) Frame = +2 Query: 101 GIKKYVVGLIIKTSSDPTCVE 121 GIKKYVVGLIIKTSSDPTCVE Sbjct: 92147 GIKKYVVGLIIKTSSDPTCVE 92209 Score = 138 bits (347), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 66/74 (89%), Positives = 70/74 (94%) Frame = +1 Query: 343 LRETLMEALHYMLLVSEVEETEIFKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDV 402 L ++ + ALHYMLLVSEVEETEIFKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDV Sbjct: 101827 LCKSFL*ALHYMLLVSEVEETEIFKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDV 102006 Query: 403 PPRRQLYLPMLFKV 416 PPRRQLYLP+L KV Sbjct: 102007 PPRRQLYLPVLSKV 102048 Score = 136 bits (342), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 65/65 (100%), Positives = 65/65 (100%) Frame = +1 Query: 772 VAENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTL 831 VAENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTL Sbjct: 117832 VAENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTL 118011 Query: 832 NMINK 836 NMINK Sbjct: 118012 NMINK 118026 Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 63/65 (96%), Positives = 65/65 (100%) Frame = +2 Query: 674 KNVDILKDPETVKQLGSILKTNVRACKAVGHPFVIQLGRIYLDMLNVYKCLSENISAAIQ 733 +NVDILKDPETVKQLGSILKTNVRACKAVGHPFVIQLGRIYLDMLNVYKCLSENISAAIQ Sbjct: 114992 QNVDILKDPETVKQLGSILKTNVRACKAVGHPFVIQLGRIYLDMLNVYKCLSENISAAIQ 115171 Query: 734 ANGEM 738 ANG+M Sbjct: 115172 ANGKM 115186 Score = 132 bits (331), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 60/61 (98%), Positives = 60/61 (98%) Frame = +3 Query: 462 VYLTHLDYVDTERIMTEKLHNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVI 521 VYLTHLDY DTERIMTEKLHNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVI Sbjct: 108522 VYLTHLDYADTERIMTEKLHNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVI 108701 Query: 522 K 522 K Sbjct: 108702 K 108704 Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 56/57 (98%), Positives = 56/57 (98%) Frame = +3 Query: 837 DFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQFKLVLDSIIWAFKHTMRNVADTG 893 DFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPP QFKLVLDSIIWAFKHTMRNVADTG Sbjct: 120867 DFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPAQFKLVLDSIIWAFKHTMRNVADTG 121037 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 56/57 (98%), Positives = 57/57 (100%) Frame = +3 Query: 575 ETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVH 631 ETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQV+ Sbjct: 111507 ETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVN 111677 Score = 109 bits (272), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 55/60 (91%), Positives = 55/60 (91%), Gaps = 1/60 (1%) Frame = +1 Query: 297 MLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHDQLIEKRLNLRETLMEA-LHYML 355 MLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEH QLIEKRLNLRETLME H ML Sbjct: 98692 MLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHGQLIEKRLNLRETLMEVRFHSML 98871 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 56/69 (81%), Positives = 59/69 (85%) Frame = +2 Query: 510 EEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKTVVNKL 569 E+ KR + DLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKTVVNKL Sbjct: 111134 EKKTKRDFFFFL*DLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKTVVNKL 111313 Query: 570 FEFMHETHD 578 FEFMH +D Sbjct: 111314 FEFMHGKYD 111340 Score = 86.3 bits (212), Expect(2) = 2e-20, Method: Compositional matrix adjust. Identities = 40/44 (90%), Positives = 42/44 (95%) Frame = +2 Query: 214 ENSQNAPLVHATLETLLRFLNWIPLGYIFETKLISTLIYKFLNV 257 ENSQNAPLVHATLETLLRFLNWIPLGYIFETKLISTLIYK + + Sbjct: 93218 ENSQNAPLVHATLETLLRFLNWIPLGYIFETKLISTLIYKVITL 93349 Score = 38.9 bits (89), Expect(2) = 2e-20, Method: Compositional matrix adjust. Identities = 17/17 (100%), Positives = 17/17 (100%) Frame = +3 Query: 197 SMCNEFSQIFQLCQFVM 213 SMCNEFSQIFQLCQFVM Sbjct: 93075 SMCNEFSQIFQLCQFVM 93125 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 45/45 (100%), Positives = 45/45 (100%) Frame = +3 Query: 630 VHTFYEAVGYMIGAQTDQTVQEHLIEKYMLLPNQVWDSIIQQATK 674 VHTFYEAVGYMIGAQTDQTVQEHLIEKYMLLPNQVWDSIIQQATK Sbjct: 113559 VHTFYEAVGYMIGAQTDQTVQEHLIEKYMLLPNQVWDSIIQQATK 113693 Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 45/50 (90%), Positives = 46/50 (92%) Frame = +2 Query: 1022 IKEFAGEDTSDLFLEEREIALRQADEEKHKRQMSVPGIFNPHEIPEEMCD 1071 I+EFAGEDTSDLFLEERE ALRQA EEKHK QMSVPGI NPHEIPEEMCD Sbjct: 123254 IQEFAGEDTSDLFLEERETALRQAQEEKHKLQMSVPGILNPHEIPEEMCD 123403 Score = 95.5 bits (236), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 45/46 (97%), Positives = 46/46 (100%) Frame = +3 Query: 893 GLQILFTLLQNVAQEEAAAQSFYQTYFCDILQHIFSVVTDTSHTAG 938 GLQIL+TLLQNVAQEEAAAQSFYQTYFCDILQHIFSVVTDTSHTAG Sbjct: 122007 GLQILYTLLQNVAQEEAAAQSFYQTYFCDILQHIFSVVTDTSHTAG 122144 Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 46/48 (95%), Positives = 47/48 (97%) Frame = +1 Query: 414 FKVRLLMVSRMAKPEEVLVVENDQGEVVREFMKDTDSINLYKNMRETL 461 +VRLLMVSRMAKPEEVLVVENDQGEVVREFMKDTDSINLYKNMRETL Sbjct: 103093 MQVRLLMVSRMAKPEEVLVVENDQGEVVREFMKDTDSINLYKNMRETL 103236 Score = 89.0 bits (219), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 41/42 (97%), Positives = 42/42 (100%) Frame = +2 Query: 1 MPAIMTMLADHAARQLLDFSQKLDINLLDNVVNCLYHGEGAQ 42 MPAIMTMLADHAARQLLDF+QKLDINLLDNVVNCLYHGEGAQ Sbjct: 72686 MPAIMTMLADHAARQLLDFNQKLDINLLDNVVNCLYHGEGAQ 72811 Score = 85.5 bits (210), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 41/42 (97%), Positives = 42/42 (100%) Frame = +3 Query: 256 NVPMFRNVSLKCLTEIAGVSVSQYEEQFVTLFTLTMMQLKQM 297 NVPMFRNVSLKCLTEIAGVSVSQYEEQFVTLFTLTMMQLKQ+ Sbjct: 94338 NVPMFRNVSLKCLTEIAGVSVSQYEEQFVTLFTLTMMQLKQV 94463 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 41/60 (68%), Positives = 50/60 (83%), Gaps = 4/60 (6%) Frame = +3 Query: 735 NGEMVTKQPLIRSMRTVKRETLKLISGWVSRSNDPQMVAE---NFVPPLL-DAVLIDYQR 790 +GEMVTKQPLIRSMRTVKRETLKLISGWVSRSNDPQMV++ + P L ++++ YQ+ Sbjct: 116184 SGEMVTKQPLIRSMRTVKRETLKLISGWVSRSNDPQMVSKC*LSIKPSTLKKSIIMAYQK 116363 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 34/34 (100%), Positives = 34/34 (100%) Frame = +1 Query: 43 QRMAQEVLTHLKEHPDAWTRVDTILEFSQNMNTK 76 QRMAQEVLTHLKEHPDAWTRVDTILEFSQNMNTK Sbjct: 77425 QRMAQEVLTHLKEHPDAWTRVDTILEFSQNMNTK 77526 Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 32/46 (69%), Positives = 36/46 (78%) Frame = +3 Query: 66 ILEFSQNMNTKYYGLQILENVIKTRWKILPRNQCEGIKKYVVGLII 111 IL FS N +YYGLQILENVIKTRWKILPRNQCEG + + L+I Sbjct: 81303 ILFFS---NFQYYGLQILENVIKTRWKILPRNQCEGREALLTSLLI 81431 >KN330546.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic scaffold scaffold7593, whole genome shotgun sequence Length = 148467 Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust. Identities = 38/192 (19%), Positives = 80/192 (41%), Gaps = 7/192 (3%) Frame = +1 Query: 22 KLDINLLDNVVNCLYHGEGAQQR-MAQEVLTHLKEHPDAWTRVDTILEFSQNMNTKYYGL 80 + + L ++ LY+ + + +AQ+ L + P AW +L + +Y+G Sbjct: 119329 RAHLQLSPQALHQLYYDPSIENKNLAQKWLMQAQVSPQAWHFSWLLLNMDKVPEIQYFGA 119508 Query: 81 QILENVIKTRWKILPRNQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQ 140 L I W +P +Q E +K + I + + K+ + +L + L + Sbjct: 119509 SALHIKISRYWNDIPADQYESLKSQLFAQIARFAGG------SKIVLTRLCVALASLALS 119670 Query: 141 EWPKHWPTFISDIV------GASRTSESLCQNNMVILKLLSEEVFDFSSGQITQVKSKHL 194 P+ WP ++D+V A+ + C + +L +L EE F + ++ Q + + Sbjct: 119671 MMPEAWPCAVADMVRMFQAEDANVDGRARCLALLELLTVLPEE---FQTSRLPQYRKGQV 119841 Query: 195 KDSMCNEFSQIF 206 + + E +F Sbjct: 119842 RSVLAQECGSVF 119877 Database: genome.fa Posted date: Sep 15, 2015 12:21 AM Number of letters in database: 2,188,353,730 Number of sequences in database: 47,351 Lambda K H 0.322 0.136 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 47351 Number of Hits to DB: 2,683,500,967 Number of extensions: 40549643 Number of successful extensions: 164550 Number of sequences better than 10.0: 2 Number of HSP's gapped: 164542 Number of HSP's successfully gapped: 24 Length of query: 1071 Length of database: 729,451,243 Length adjustment: 141 Effective length of query: 930 Effective length of database: 722,774,752 Effective search space: 672180519360 Effective search space used: 672180519360 Neighboring words threshold: 13 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 55 (25.8 bits)