TBLASTN 2.2.26 [Sep-21-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= SPP00000060_2.0 # Protein # Selenophosphate synthetase 1 (SPS1) # Human (Homo sapiens) (321 letters) Database: genome.fa 47,351 sequences; 2,188,353,730 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value KN331553.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic... 150 2e-38 KN325147.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic... 120 2e-28 KN350030.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic... 97 2e-20 KN345955.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic... 38 0.58 KN326397.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic... 35 4.9 >KN331553.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic scaffold scaffold8538, whole genome shotgun sequence Length = 273707 Score = 150 bits (379), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 71/72 (98%), Positives = 72/72 (100%) Frame = +1 Query: 250 TGGLLICLPREQAARFCAEIKSPKYGEGHQAWIIGIVEKGNRTARIIDKPRIIEVAPQVA 309 +GGLLICLPREQAARFCAEIKSPKYGEGHQAWIIGIVEKGNRTARIIDKPRIIEVAPQVA Sbjct: 201178 SGGLLICLPREQAARFCAEIKSPKYGEGHQAWIIGIVEKGNRTARIIDKPRIIEVAPQVA 201357 Query: 310 TQNVNPTPGATS 321 TQNVNPTPGATS Sbjct: 201358 TQNVNPTPGATS 201393 Score = 135 bits (340), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 64/65 (98%), Positives = 64/65 (98%) Frame = +2 Query: 1 MSTRESFNPESYELDKSFRLTRFTELKGTGCKVPQDVLQKLLESLQENHFQEDEQFLGAV 60 MS RESFNPESYELDKSFRLTRFTELKGTGCKVPQDVLQKLLESLQENHFQEDEQFLGAV Sbjct: 172655 MSVRESFNPESYELDKSFRLTRFTELKGTGCKVPQDVLQKLLESLQENHFQEDEQFLGAV 172834 Query: 61 MPRLG 65 MPRLG Sbjct: 172835 MPRLG 172849 Score = 109 bits (272), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 52/52 (100%), Positives = 52/52 (100%) Frame = +1 Query: 136 ERDKVMPLIIQGFKDAAEEAGTSVTGGQTVLNPWIVLGGVATTVCQPNEFIM 187 ERDKVMPLIIQGFKDAAEEAGTSVTGGQTVLNPWIVLGGVATTVCQPNEFIM Sbjct: 185371 ERDKVMPLIIQGFKDAAEEAGTSVTGGQTVLNPWIVLGGVATTVCQPNEFIM 185526 Score = 82.0 bits (201), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 37/48 (77%), Positives = 42/48 (87%) Frame = +1 Query: 97 YMMGRIACANVLSDLYAMGVTECDNMLMLLGVSNKMTDRERDKVMPLI 144 + GRIACANVLSDLYAMGVTECDNMLMLLG+SNKMTDR R V+ ++ Sbjct: 184333 FFQGRIACANVLSDLYAMGVTECDNMLMLLGISNKMTDRVRSVVLAVM 184476 Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 35/35 (100%), Positives = 35/35 (100%) Frame = +1 Query: 65 GIGMDTCVIPLRHGGLSLVQTTDYIYPIVDDPYMM 99 GIGMDTCVIPLRHGGLSLVQTTDYIYPIVDDPYMM Sbjct: 175330 GIGMDTCVIPLRHGGLSLVQTTDYIYPIVDDPYMM 175434 Score = 73.6 bits (179), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 34/34 (100%), Positives = 34/34 (100%) Frame = +3 Query: 218 PEKWNKIKLVVTQEDVELAYQEAMMNMARLNRTG 251 PEKWNKIKLVVTQEDVELAYQEAMMNMARLNRTG Sbjct: 191454 PEKWNKIKLVVTQEDVELAYQEAMMNMARLNRTG 191555 Score = 65.5 bits (158), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 31/37 (83%), Positives = 33/37 (89%) Frame = +3 Query: 188 PDNAVPGDVLVLTKPLGTQVAVAVHQWLDIPEKWNKI 224 PDNAVPGDVLVLTKPLGTQVAVAVHQWLDI K ++ Sbjct: 186351 PDNAVPGDVLVLTKPLGTQVAVAVHQWLDIVSKLQRM 186461 >KN325147.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic scaffold scaffold2013, whole genome shotgun sequence Length = 34594 Score = 120 bits (302), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 59/84 (70%), Positives = 65/84 (77%) Frame = +1 Query: 233 VELAYQEAMMNMARLNRTGGLLICLPREQAARFCAEIKSPKYGEGHQAWIIGIVEKGNRT 292 + L + A M GGLLICLPREQAARFCAEIKSPK+GEGHQAWIIGIVEKGN+T Sbjct: 25822 LRLKARAAFMLTWHPISVGGLLICLPREQAARFCAEIKSPKHGEGHQAWIIGIVEKGNQT 26001 Query: 293 ARIIDKPRIIEVAPQVATQNVNPT 316 ARIIDKPRIIEV P+ A +PT Sbjct: 26002 ARIIDKPRIIEVTPRGAAATASPT 26073 Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 42/53 (79%), Positives = 51/53 (96%) Frame = +2 Query: 135 RERDKVMPLIIQGFKDAAEEAGTSVTGGQTVLNPWIVLGGVATTVCQPNEFIM 187 +ER+K+MPLII+GF+DAAE+ GTSVTGGQTV+NPWI++GGVAT VCQPNEFIM Sbjct: 24287 QEREKIMPLIIKGFRDAAEDGGTSVTGGQTVMNPWIIVGGVATVVCQPNEFIM 24445 Score = 60.8 bits (146), Expect(2) = 9e-20, Method: Compositional matrix adjust. Identities = 27/34 (79%), Positives = 32/34 (94%) Frame = +3 Query: 218 PEKWNKIKLVVTQEDVELAYQEAMMNMARLNRTG 251 P++WNKIKLVV++EDVELAYQEAM +MA LNRTG Sbjct: 24816 PDRWNKIKLVVSKEDVELAYQEAMFSMAMLNRTG 24917 Score = 60.1 bits (144), Expect(2) = 9e-20, Method: Compositional matrix adjust. Identities = 29/39 (74%), Positives = 31/39 (79%), Gaps = 2/39 (5%) Frame = +1 Query: 180 CQPNEFIM--PDNAVPGDVLVLTKPLGTQVAVAVHQWLD 216 C + I+ PDNAVPGDVLVLTKPLGTQVAV HQWLD Sbjct: 24616 CTAHGCILSRPDNAVPGDVLVLTKPLGTQVAVTAHQWLD 24732 Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 31/38 (81%), Positives = 35/38 (92%) Frame = +1 Query: 62 PRLGIGMDTCVIPLRHGGLSLVQTTDYIYPIVDDPYMM 99 P GIGMD+CVIPLRHGGLSLVQTTD+ YP+V+DPYMM Sbjct: 22819 PPPGIGMDSCVIPLRHGGLSLVQTTDFFYPLVEDPYMM 22932 Score = 71.6 bits (174), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 34/41 (82%), Positives = 35/41 (85%) Frame = +2 Query: 100 GRIACANVLSDLYAMGVTECDNMLMLLGVSNKMTDRERDKV 140 GRIACANVLSDLYAMG+TECDNMLMLL VS KMTD R V Sbjct: 23147 GRIACANVLSDLYAMGITECDNMLMLLSVSQKMTDEVRLHV 23269 Score = 41.2 bits (95), Expect = 0.059, Method: Compositional matrix adjust. Identities = 17/31 (54%), Positives = 21/31 (67%) Frame = +1 Query: 7 FNPESYELDKSFRLTRFTELKGTGCKVPQDV 37 F PE+ L +RLT F EL+G GCKVPQ+ Sbjct: 22294 FEPEALGLSPGWRLTGFGELRG*GCKVPQET 22386 >KN350030.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic scaffold scaffold28841, whole genome shotgun sequence Length = 217117 Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 42/53 (79%), Positives = 51/53 (96%) Frame = -2 Query: 135 RERDKVMPLIIQGFKDAAEEAGTSVTGGQTVLNPWIVLGGVATTVCQPNEFIM 187 +ER+K+MPLII+GF+DAAE+ GTSVTGGQTV+NPWI++GGVAT VCQPNEFIM Sbjct: 20049 QEREKIMPLIIKGFRDAAEDGGTSVTGGQTVMNPWIIVGGVATVVCQPNEFIM 19891 >KN345955.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic scaffold scaffold24224, whole genome shotgun sequence Length = 27493 Score = 37.7 bits (86), Expect = 0.58, Method: Compositional matrix adjust. Identities = 17/49 (34%), Positives = 28/49 (57%) Frame = -3 Query: 134 DRERDKVMPLIIQGFKDAAEEAGTSVTGGQTVLNPWIVLGGVATTVCQP 182 DRER+K + ++ + F D EE ++ G ++PW VL +A +C P Sbjct: 7304 DRERNKQLKILTE*FMDYLEELDAFMSAGVVKIHPW-VLKELAEVICYP 7161 >KN326397.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic scaffold scaffold3316, whole genome shotgun sequence Length = 73192 Score = 35.0 bits (79), Expect = 4.9, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 2/62 (3%) Frame = +2 Query: 165 VLNPWIVLGGVATTVCQP--NEFIMPDNAVPGDVLVLTKPLGTQVAVAVHQWLDIPEKWN 222 VL PW++ G VA N F ++A PG V V P GT H + P +W Sbjct: 70346 VLGPWVLSGSVALHSAHSGLNSFSSLESA-PGRVKVTAYPTGTNGTSVYHPYSPYPNRWY 70522 Query: 223 KI 224 K Sbjct: 70523 KF 70528 Database: genome.fa Posted date: Sep 15, 2015 12:21 AM Number of letters in database: 2,188,353,730 Number of sequences in database: 47,351 Lambda K H 0.319 0.136 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 47351 Number of Hits to DB: 822,831,499 Number of extensions: 12335105 Number of successful extensions: 42944 Number of sequences better than 10.0: 5 Number of HSP's gapped: 42942 Number of HSP's successfully gapped: 17 Length of query: 321 Length of database: 729,451,243 Length adjustment: 129 Effective length of query: 192 Effective length of database: 723,342,964 Effective search space: 138881849088 Effective search space used: 138881849088 Neighboring words threshold: 13 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 51 (24.3 bits)