TBLASTN 2.2.26 [Sep-21-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= SPP00001042_2.0 # Protein # Selenocysteine synthase (SecS) # Chicken (Gallus gallus) (467 letters) Database: genome.fa 47,351 sequences; 2,188,353,730 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value KN341850.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic... 120 2e-42 >KN341850.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic scaffold scaffold19691, whole genome shotgun sequence Length = 79417 Score = 119 bits (298), Expect(2) = 2e-42, Method: Compositional matrix adjust. Identities = 54/55 (98%), Positives = 55/55 (100%) Frame = -2 Query: 129 AGVRTVTNCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMITAG 183 AGVRTVT+CFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMITAG Sbjct: 49161 AGVRTVTSCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMITAG 48997 Score = 78.2 bits (191), Expect(2) = 2e-42, Method: Compositional matrix adjust. Identities = 38/42 (90%), Positives = 40/42 (95%) Frame = -1 Query: 89 YRLIHGIGRSGDISAVQPKAAGSSLLNKLTNSVVLDIIKQAG 130 +RLIHGIGRSGDISAVQPKAAGSSLLNKLTN +VLDIIK AG Sbjct: 49375 FRLIHGIGRSGDISAVQPKAAGSSLLNKLTNLIVLDIIKLAG 49250 Score = 120 bits (300), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 67/119 (56%), Positives = 74/119 (62%), Gaps = 42/119 (35%) Frame = -1 Query: 269 GARVGRIDAFVQSLDKNFMVPVGGAIIAGFSESFIQEISKMYP----------------- 311 GARVGRIDAF+QSLDKNFMVPVGGAIIAGF++SFI+EISKMYP Sbjct: 33772 GARVGRIDAFIQSLDKNFMVPVGGAIIAGFNDSFIKEISKMYPGKSFTSQLIFSK*I*TT 33593 Query: 312 -------------------------GRASASPSLDVLITLLSLGASGYKQLLKERKEMF 345 GRASASPSLDV ITLLSLGA+GY+QLLK+RK F Sbjct: 33592 CNSVSLHI*ISFL*R*SVFLYIVILGRASASPSLDVFITLLSLGANGYRQLLKQRKVSF 33416 Score = 115 bits (287), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 52/52 (100%), Positives = 52/52 (100%) Frame = -3 Query: 39 GKCPEDGWDESTIELFLHELAIMDSNNFLGNCGVGEREGRVASGLVARRHYR 90 GKCPEDGWDESTIELFLHELAIMDSNNFLGNCGVGEREGRVASGLVARRHYR Sbjct: 52799 GKCPEDGWDESTIELFLHELAIMDSNNFLGNCGVGEREGRVASGLVARRHYR 52644 Score = 112 bits (279), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 53/67 (79%), Positives = 58/67 (86%), Gaps = 4/67 (5%) Frame = -2 Query: 404 RVVPRGSVQTVNNYTFKGFMSHTNDYPCAYLNAASAIGIKKQDVDIFLKRLDKCLKA--- 460 RVVPR QTVNNYTFKGFMSHTN+YPCAYLNAASAIG+KKQDVD+FLKRLDKCLK Sbjct: 10686 RVVPRSFQQTVNNYTFKGFMSHTNNYPCAYLNAASAIGMKKQDVDMFLKRLDKCLKTFGK 10507 Query: 461 -SRKGKE 466 + KGK+ Sbjct: 10506 ETNKGKD 10486 Score = 102 bits (254), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 52/88 (59%), Positives = 64/88 (72%), Gaps = 6/88 (6%) Frame = -1 Query: 153 LTLRHKRPKAKYIIWPRIDQKSCFKS------MITAGFEPVVIENVLEGDELRTDIEAVE 206 L +R+ +P + I D+ CF + ++ GFEPVVIENVLE DELRTD++ VE Sbjct: 43036 LEIRNVQPGSNLKI*--TDKNYCFLNSNVLVLLVGLGFEPVVIENVLENDELRTDLQGVE 42863 Query: 207 AKIKTLGAENILCVHSTTSCFAPRVPDR 234 AKI+ LGAEN+LCVHSTTSCFAPRVPDR Sbjct: 42862 AKIQELGAENVLCVHSTTSCFAPRVPDR 42779 Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 34/35 (97%), Positives = 35/35 (100%) Frame = -2 Query: 234 RLEELAIICANYDIPHIVNNAYGVQSSKCMHLIQQ 268 RLEELA+ICANYDIPHIVNNAYGVQSSKCMHLIQQ Sbjct: 37011 RLEELAVICANYDIPHIVNNAYGVQSSKCMHLIQQ 36907 Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 32/38 (84%), Positives = 33/38 (86%) Frame = -1 Query: 1 MNTENFGSSERLVTAAYVRQGAQGRRGHELLLRALLEQ 38 MN ENF +SERLV AAYVRQGAQGRR HEL LRALLEQ Sbjct: 59440 MNGENFAASERLVAAAYVRQGAQGRRAHELRLRALLEQ 59327 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 28/32 (87%), Positives = 31/32 (96%) Frame = -2 Query: 342 KEMFSYLSSELKKLADIHNERLLDTPHNPISL 373 +EMF YL+SELKKLA+IHNERLLDTPHNPISL Sbjct: 12969 QEMFLYLTSELKKLAEIHNERLLDTPHNPISL 12874 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 28/34 (82%), Positives = 32/34 (94%) Frame = -3 Query: 371 ISLAMSLKNLDENNDAAVTQLGSMLFTRQVSGAR 404 +S AMSLKNL+E++D AVTQLGSMLFTRQVSGAR Sbjct: 12263 MSAAMSLKNLEEHSDTAVTQLGSMLFTRQVSGAR 12162 Database: genome.fa Posted date: Sep 15, 2015 12:21 AM Number of letters in database: 2,188,353,730 Number of sequences in database: 47,351 Lambda K H 0.320 0.135 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 47351 Number of Hits to DB: 1,153,609,975 Number of extensions: 16608221 Number of successful extensions: 66270 Number of sequences better than 10.0: 1 Number of HSP's gapped: 66267 Number of HSP's successfully gapped: 11 Length of query: 467 Length of database: 729,451,243 Length adjustment: 133 Effective length of query: 334 Effective length of database: 723,153,560 Effective search space: 241533289040 Effective search space used: 241533289040 Neighboring words threshold: 13 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 52 (24.6 bits)