TBLASTN 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= SPP00000019_2.0 # Protein # Glutathione peroxidase 2 (GPx2) #
Human (Homo sapiens)
         (190 letters)

Database: genome.fa 
           47,351 sequences; 2,188,353,730 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KN332733.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic...   191   2e-54
KN325303.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic...   167   3e-46
KN325192.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic...    67   1e-19
KN338580.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic...    79   2e-15
KN325713.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic...    59   2e-08
KN330210.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic...    50   1e-05
KN343115.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic...    50   2e-05
KN350882.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic...    44   0.001

>KN332733.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic scaffold
             scaffold9928, whole genome shotgun sequence
          Length = 64086

 Score =  191 bits (484), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 84/116 (72%), Positives = 101/116 (87%)
 Frame = +1

Query: 74    QENCQNEEILNSLKYVRPGGGYQPTFTLVQKCEVNGQNEHPVFAYLKDKLPYPYDDPFSL 133
             QENC NEEILNSLKYVRPGGG++P FTL QKC+VNGQ+ HPVFAYLK  LP P D+P +L
Sbjct: 37009 QENCTNEEILNSLKYVRPGGGFEPNFTLFQKCQVNGQDTHPVFAYLKAHLPAPVDNPAAL 37188

Query: 134   MTDPKLIIWSPVRRSDVAWNFEKFLIGPEGEPFRRYSRTFPTINIEPDIKRLLKVA 189
             MTDP+ ++WSPV+R+DV WNFEKFL+GPEGEPF+RYS  F T ++EPDI+RLLK+A
Sbjct: 37189 MTDPRFLVWSPVQRADVTWNFEKFLVGPEGEPFKRYSPKFQTSHVEPDIQRLLKLA 37356



 Score =  127 bits (318), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 61/74 (82%), Positives = 66/74 (89%)
 Frame = +1

Query: 1     MAFIAKSFYDLSAISLDGEKVDFNTFRGRAVLIENVASLUGTTTRDFTQLNELQCRFPRR 60
             M  IAKSFYDLSAI+L GEKVDFN FRGR VLIENVASL GTT RD+TQLN+LQ R+PRR
Sbjct: 34981 MTPIAKSFYDLSAITLQGEKVDFNNFRGRVVLIENVASL*GTTVRDYTQLNQLQARYPRR 35160

Query: 61    LVVLGFPCNQFGHQ 74
             LVVLGFPCNQFG+Q
Sbjct: 35161 LVVLGFPCNQFGYQ 35202


>KN325303.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic scaffold
             scaffold2189, whole genome shotgun sequence
          Length = 63301

 Score =  167 bits (423), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 73/113 (64%), Positives = 95/113 (84%)
 Frame = -1

Query: 75    ENCQNEEILNSLKYVRPGGGYQPTFTLVQKCEVNGQNEHPVFAYLKDKLPYPYDDPFSLM 134
             EN  N+EIL SLKYVRPG GY+P FT+ +KC+VNG N HP+F +LK+ LP+P+DDP +LM
Sbjct: 24871 ENATNDEILLSLKYVRPGNGYEPNFTMFEKCDVNGDNAHPLFKFLKEALPFPHDDPVALM 24692

Query: 135   TDPKLIIWSPVRRSDVAWNFEKFLIGPEGEPFRRYSRTFPTINIEPDIKRLLK 187
             T+P+ IIWSPV R+D++WNFEKFLIGP+G PF+RYSR F TI I+ DI++LL+
Sbjct: 24691 TNPQYIIWSPVCRNDISWNFEKFLIGPDGIPFKRYSRRFETIKIQDDIEKLLQ 24533



 Score = 82.0 bits (201), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 42/75 (56%), Positives = 50/75 (66%), Gaps = 2/75 (2%)
 Frame = -1

Query: 2     AFIAKSFYDLSAISLDG-EKVDFNTFRGRAVLIENVASLUGTTTRDFTQLNELQCRF-PR 59
             A   +    + A  L G E +  ++  GR +L+ NVASL GTT RDF QLNELQ R+ PR
Sbjct: 30331 AVAGRGLAGMQARPLGGGEPLALDSLLGRVLLVSNVASL*GTTARDFVQLNELQERYGPR 30152

Query: 60    RLVVLGFPCNQFGHQ 74
              LVVLGFPCNQFGHQ
Sbjct: 30151 GLVVLGFPCNQFGHQ 30107


>KN325192.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic scaffold
             scaffold2042, whole genome shotgun sequence
          Length = 57782

 Score = 67.0 bits (162), Expect(2) = 1e-19,   Method: Compositional matrix adjust.
 Identities = 44/114 (38%), Positives = 51/114 (44%), Gaps = 40/114 (35%)
 Frame = +2

Query: 47    FTQLNELQCRF-PRRLVVLGFPCNQFGHQENCQNEEILNSLK------------------ 87
               +LN LQ    P  LVVLGFP NQFG QE  QN EIL +LK                  
Sbjct: 38300 LAELNALQSELGPYGLVVLGFPSNQFGKQEPGQNAEILPALK*VPEPGLGWGLPSTGSAP 38479

Query: 88    ---------------------YVRPGGGYQPTFTLVQKCEVNGQNEHPVFAYLK 120
                                  YVRPGGG+ P F L QK +VNG+ E  V+ +LK
Sbjct: 38480 TCVGRGWKGARRPILPFHFFRYVRPGGGFVPNFQLFQKGDVNGEREQKVYTFLK 38641



 Score = 52.0 bits (123), Expect(2) = 1e-19,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 31/53 (58%)
 Frame = +3

Query: 136   DPKLIIWSPVRRSDVAWNFEKFLIGPEGEPFRRYSRTFPTINIEPDIKRLLKV 188
             DPK + W P++  D+ WNFEKFL+GP+G P  R+        ++ DI   +K 
Sbjct: 38757 DPKQLFWQPLKIHDIKWNFEKFLVGPDGVPVMRWYHRATMATVKNDIVEYMKA 38915


>KN338580.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic scaffold
              scaffold16095, whole genome shotgun sequence
          Length = 178707

 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 77/166 (46%), Gaps = 1/166 (0%)
 Frame = +2

Query: 6      KSFYDLSAISLDGEKVDFNTFRGRAVLIENVASLUGTTTRDFTQLNELQCRFPRR-LVVL 64
              KS Y   A  +DG +V    ++    +I NVAS  G    ++TQ  ++  R+  R L +L
Sbjct: 178277 KSIYYFHAKDIDGNEVSLEKYQRHVCIITNVASK*GKMDVNYTQFVDMYARYAERGLCIL 178456

Query: 65     GFPCNQFGHQENCQNEEILNSLKYVRPGGGYQPTFTLVQKCEVNGQNEHPVFAYLKDKLP 124
               FPCNQFG QE   N +I    +       Y   F +  K +VNG    P++ +LKD+  
Sbjct: 178457 AFPCNQFGKQEPGDNAQIKAFAER------YGVKFDVFSKIDVNGDEALPLWKWLKDQ-- 178612

Query: 125    YPYDDPFSLMTDPKLIIWSPVRRSDVAWNFEKFLIGPEGEPFRRYS 170
                          PK         + + WNF KFLI  +G+  +RYS
Sbjct: 178613 ------------PKG---RGTLGNAIKWNFRKFLIDQQGQVVKRYS 178705


>KN325713.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic scaffold
              scaffold2594, whole genome shotgun sequence
          Length = 144888

 Score = 58.5 bits (140), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/95 (36%), Positives = 48/95 (50%), Gaps = 1/95 (1%)
 Frame = +1

Query: 29     RAVLIENVASLUGTTTRDFTQLNELQCRF-PRRLVVLGFPCNQFGHQENCQNEEILNSLK 87
              +A L+ NVAS    T +++ +L EL   F P    VL FPCNQFG  E   ++EI +  K
Sbjct: 106576 KASLVVNVASYCQHTDKNYIELQELHREFGPSHFTVLAFPCNQFGESEPSSSQEIESFAK 106755

Query: 88     YVRPGGGYQPTFTLVQKCEVNGQNEHPVFAYLKDK 122
                   G Y  TF +  K ++ G    P F +L  K
Sbjct: 106756 -----GNYGVTFPIFYKIKILGSEAEPAFKFLVGK 106845


>KN330210.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic scaffold
             scaffold7192, whole genome shotgun sequence
          Length = 293575

 Score = 50.4 bits (119), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
 Frame = +3

Query: 5     AKSFYDLSAISLDGEKVDFNTFRGRAVLIENVASLUGTTTRDFTQLNELQCRFPRR-LVV 63
             AKS Y+  A   DG  V    +RG A +I +VAS    T  ++TQL ++      R L +
Sbjct: 44604 AKSIYESHAKDFDGSHVSLEKYRGYACIITSVASK*DKTDINYTQLVDMYAT*TERCLRI 44783

Query: 64    LGFPCNQFGHQ 74
             L FPCNQF  Q
Sbjct: 44784 LAFPCNQFKKQ 44816


>KN343115.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic scaffold
            scaffold21068, whole genome shotgun sequence
          Length = 77018

 Score = 50.1 bits (118), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/84 (40%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
 Frame = +2

Query: 37   ASLUGTTTRDFTQLNELQCRF-PRRLVVLGFPCNQFGHQENCQNEEILNSLKYVRPGGGY 95
            AS  G T   +  L +LQ    P    VL FPCNQFG QE   N+EI N  +       Y
Sbjct: 5396 ASECGYTDSHYKALQQLQRDLGPYHFNVLAFPCNQFGQQEPDSNKEIENFARKT-----Y 5560

Query: 96   QPTFTLVQKCEVNGQNEHPVFAYL 119
              TF L  K  V+G   + VF YL
Sbjct: 5561 GATFPLFSKTAVSGAGANAVFKYL 5632


>KN350882.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic scaffold
              scaffold29685, whole genome shotgun sequence
          Length = 211812

 Score = 44.3 bits (103), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
 Frame = -2

Query: 26     FRGRAVLIENVASLUGTTTRDFTQLNELQCRFPRR-LVVLGFPCNQFGHQ 74
               RG   +I NVAS  G T  ++TQ  ++  R+  R L +L FPCNQFG Q
Sbjct: 120857 LRGHVCIITNVASK*GKTDVNYTQFVDMYARYAERGLRILAFPCNQFGKQ 120708


  Database: genome.fa
    Posted date:  Sep 15, 2015 12:21 AM
  Number of letters in database: 2,188,353,730
  Number of sequences in database:  47,351
  
Lambda     K      H
   0.324    0.142    0.441 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 47351
Number of Hits to DB: 516,447,629
Number of extensions: 8764427
Number of successful extensions: 27432
Number of sequences better than 10.0: 8
Number of HSP's gapped: 27422
Number of HSP's successfully gapped: 12
Length of query: 190
Length of database: 729,451,243
Length adjustment: 122
Effective length of query: 68
Effective length of database: 723,674,421
Effective search space: 49209860628
Effective search space used: 49209860628
Neighboring words threshold: 13
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 49 (23.5 bits)