TBLASTN 2.2.26 [Sep-21-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= SPP00002930_2.0 # Protein # glucose-6-phosphate dehydrogenase (G6PD) # Human (Homo sapiens) (545 letters) Database: genome.fa 47,351 sequences; 2,188,353,730 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value KN354991.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic... 155 6e-56 KN330633.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic... 97 8e-19 KN325147.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic... 91 5e-17 KN334372.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic... 69 3e-10 KN349117.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic... 35 7.1 >KN354991.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic scaffold scaffold34970, whole genome shotgun sequence Length = 13825 Score = 103 bits (256), Expect(3) = 6e-56, Method: Compositional matrix adjust. Identities = 46/55 (83%), Positives = 51/55 (92%) Frame = +1 Query: 193 GWNRIIVEKPFGRDLQSSDRLSNHISSLFREDQIYRIDHYLGKEMVQNLMVLRFA 247 W R+IVEKPFG+DL SSD+LSNHI+ LFREDQIYRIDHYLGKEMVQNLMVLR+A Sbjct: 148 SWTRVIVEKPFGKDLASSDKLSNHIAGLFREDQIYRIDHYLGKEMVQNLMVLRWA 312 Score = 96.3 bits (238), Expect(3) = 6e-56, Method: Compositional matrix adjust. Identities = 43/56 (76%), Positives = 46/56 (82%) Frame = +3 Query: 241 LMVLRFANRIFGPIWNRDNIACVILTFKEPFGTEGRGGYFDEFGIIRDVMQNHLLQ 296 ++ RF NRIFGPIWNRDN+ACVILTFKEPFGTEGRGGYFDEFGIIR H Q Sbjct: 387 FLLGRFGNRIFGPIWNRDNVACVILTFKEPFGTEGRGGYFDEFGIIR*AKAGHSEQ 554 Score = 64.7 bits (156), Expect(3) = 6e-56, Method: Compositional matrix adjust. Identities = 30/32 (93%), Positives = 31/32 (96%) Frame = +1 Query: 288 DVMQNHLLQMLCLVAMEKPASTNSDDVRDEKV 319 DVMQNHLLQMLCLVAMEKPAST+ DDVRDEKV Sbjct: 652 DVMQNHLLQMLCLVAMEKPASTHPDDVRDEKV 747 Score = 155 bits (392), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 72/84 (85%), Positives = 77/84 (91%) Frame = +3 Query: 381 GVPFILRCGKALNERKAEVRLQFHDVAGDIFHQQCKRNELVIRVQPNEAVYTKMMTKKPG 440 GVPF+LRCGKALNERKAEVRLQF DV GDIF QCKRNELV+RVQPNEAVYTKMMTKKPG Sbjct: 2211 GVPFVLRCGKALNERKAEVRLQFRDVPGDIFQNQCKRNELVVRVQPNEAVYTKMMTKKPG 2390 Query: 441 MFFNPEESELDLTYGNRYKNVKLP 464 MFF+PEESELDLTYG+RYK + P Sbjct: 2391 MFFSPEESELDLTYGSRYKVLHPP 2462 Score = 66.2 bits (160), Expect(2) = 3e-19, Method: Compositional matrix adjust. Identities = 31/35 (88%), Positives = 31/35 (88%) Frame = +2 Query: 485 SDELREAWRIFTPLLHQIELEKPKPIPYIYGSRGP 519 SDELREAWRIFTPLLHQIE EK KPIPYIYG GP Sbjct: 3335 SDELREAWRIFTPLLHQIEAEKVKPIPYIYGR*GP 3439 Score = 54.3 bits (129), Expect(2) = 3e-19, Method: Compositional matrix adjust. Identities = 23/26 (88%), Positives = 26/26 (100%) Frame = +1 Query: 459 KNVKLPDAYERLILDVFCGSQMHFVR 484 ++VKLPDAYERLILDVFCG+QMHFVR Sbjct: 3181 QDVKLPDAYERLILDVFCGNQMHFVR 3258 Score = 94.7 bits (234), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 43/64 (67%), Positives = 49/64 (76%) Frame = +2 Query: 318 KVKVLKCISEVQANNVVLGQYVGNPDGEGEATKGYLDDPTVPRGSTTATFAAVVLYVENE 377 +VKVLKCI V +VVLGQY+G+P G+GEA +GY DDPTVP GS T TFA LYV NE Sbjct: 1682 QVKVLKCILPVGLGDVVLGQYMGDPTGQGEACQGYRDDPTVPPGSNTPTFATATLYVHNE 1861 Query: 378 RWDG 381 RWDG Sbjct: 1862 RWDG 1873 Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 26/30 (86%), Positives = 29/30 (96%) Frame = +1 Query: 516 SRGPTEADELMKRVGFQYEGTYKWVNPHKL 545 SRGP EAD+L+KRVGFQYEGTY+WVNPHKL Sbjct: 3586 SRGPPEADDLLKRVGFQYEGTYRWVNPHKL 3675 >KN330633.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic scaffold scaffold7542, whole genome shotgun sequence Length = 220769 Score = 96.7 bits (239), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 56/194 (28%), Positives = 107/194 (55%), Gaps = 14/194 (7%) Frame = -3 Query: 58 QSDTHI-FIIMGASGDLAKKKIYPTIWWLFRDGLLPENTFIVGYARSRLTVADIRKQSEP 116 +S HI +++GA+GDLAKK ++ ++ L+RD + ++F + + LT + ++ Sbjct: 149733 ESRGHISVVLLGATGDLAKKYLWQGLFQLYRDEVSNGHSFT--FHGAALTAPEPGQKM-- 149566 Query: 117 FFKATPEEKLKLEDFFARNSYVAGQYDDAASYQRLNSHMNALHLG------------SQA 164 F+ ++ R + + Q+ + Y +L + N L +A Sbjct: 149565 MFEVLKNLACPPDEHPTRCAVLKDQFLKLSQYYQLRTAENYTVLNREIETLLEQEGLEEA 149386 Query: 165 NRLFYLALPPTVYEAVTKNIHESCMSQIG-WNRIIVEKPFGRDLQSSDRLSNHISSLFRE 223 R+FY ++PP Y + +I+ SC + G W R+++EKPFG DL+S+ +L+ + + F+E Sbjct: 149385 GRIFYFSVPPFAYAEIAGHINSSCRPRPGAWLRVVLEKPFGHDLESAQQLAAELRNFFKE 149206 Query: 224 DQIYRIDHYLGKEM 237 +++YR+DHYLGK++ Sbjct: 149205 EEMYRVDHYLGKQV 149164 Score = 71.2 bits (173), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 51/173 (29%), Positives = 82/173 (47%), Gaps = 25/173 (14%) Frame = -2 Query: 364 TATFAAVVLYVENERWDGVPFILRCGKALNERKAEVRLQFHDVA--------GDIFHQQC 415 + + V+++V++ RW+GVPFIL GKAL+ER +R+ F + A D H QC Sbjct: 141436 SHVISGVLIHVDSLRWEGVPFILTSGKALDERVGYIRVLFKNRAYCTQSEALRDAEHSQC 141257 Query: 416 KRNELVIRVQPNE----AVYTKMMTKKPGMFFNPEESELDLT-------YGNR------Y 458 K +++ + E AV +P M PE S ++T +G Y Sbjct: 141256 KAKQIIFYIGHGELNSPAVLVSRNLFRPVM---PEGSWREVTDRPQMHLFGQPLSDYYVY 141086 Query: 459 KNVKLPDAYERLILDVFCGSQMHFVRSDELREAWRIFTPLLHQIELEKPKPIP 511 +K DAY LI ++ + F+ ++ L +W +TPLL I + P+ P Sbjct: 141085 SPMKERDAYAMLISSIYHARKDFFITTENLLASWEFWTPLLDSISHQAPRLYP 140927 Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 25/65 (38%), Positives = 46/65 (70%), Gaps = 1/65 (1%) Frame = -3 Query: 275 GRGGYFDEFGIIRDVMQNHLLQMLCLVAMEKPASTNS-DDVRDEKVKVLKCISEVQANNV 333 GR +++++G+IRDV+QNHL +++ +AME PA+ +S +DV K++ K + ++ + Sbjct: 142593 GRASFYEQYGVIRDVLQNHLTEVMMYLAMELPANISSTEDVLQHKLQTFKSLQGLEKTSA 142414 Query: 334 VLGQY 338 V+GQY Sbjct: 142413 VIGQY 142399 >KN325147.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic scaffold scaffold2013, whole genome shotgun sequence Length = 34594 Score = 90.9 bits (224), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 42/71 (59%), Positives = 56/71 (78%) Frame = +3 Query: 116 PFFKATPEEKLKLEDFFARNSYVAGQYDDAASYQRLNSHMNALHLGSQANRLFYLALPPT 175 P + PEE KLE FF+RNSYV+G YD+ A++ RL++H+ +L G+QANRLFYLALPP+ Sbjct: 34380 PT*QVVPEELEKLEAFFSRNSYVSGHYDEPAAFARLDAHLRSLPKGNQANRLFYLALPPS 34559 Query: 176 VYEAVTKNIHE 186 VYE VT++I E Sbjct: 34560 VYEDVTRHIKE 34592 Score = 65.5 bits (158), Expect(2) = 3e-12, Method: Compositional matrix adjust. Identities = 27/36 (75%), Positives = 34/36 (94%) Frame = +1 Query: 84 WLFRDGLLPENTFIVGYARSRLTVADIRKQSEPFFK 119 WLFRDGLLP++T++VG+ARS+LTVADIR QSEP+ K Sbjct: 34117 WLFRDGLLPDDTYVVGFARSQLTVADIRHQSEPYLK 34224 Score = 31.2 bits (69), Expect(2) = 3e-12, Method: Compositional matrix adjust. Identities = 12/13 (92%), Positives = 13/13 (100%) Frame = +3 Query: 71 GDLAKKKIYPTIW 83 GDLAKKKIYPT+W Sbjct: 34002 GDLAKKKIYPTVW 34040 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 27/55 (49%), Positives = 37/55 (67%) Frame = +1 Query: 26 SADSVMAEQVALSRTQVCGILREELFQGDAFHQSDTHIFIIMGASGDLAKKKIYP 80 S MA+ LSR+QVCG+LR+EL QG FH +D H+F+I+GAS ++ I P Sbjct: 32407 SPGRTMAKPQELSRSQVCGMLRQELCQGQDFHPADAHVFVILGAS--VSSSSIAP 32565 >KN334372.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic scaffold scaffold11646, whole genome shotgun sequence Length = 181646 Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 29/52 (55%), Positives = 41/52 (78%) Frame = +2 Query: 193 GWNRIIVEKPFGRDLQSSDRLSNHISSLFREDQIYRIDHYLGKEMVQNLMVL 244 GW +IIVEKP D++SS++LS H+++L+ E Q+Y+ID YLG+EM NLM L Sbjct: 128423 GWKKIIVEKPCQSDMESSNKLSQHLATLYNEKQLYQIDCYLGEEMAPNLMEL 128578 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 19/39 (48%), Positives = 22/39 (56%) Frame = +2 Query: 335 LGQYVGNPDGEGEATKGYLDDPTVPRGSTTATFAAVVLY 373 LGQ GN EGEA +GYLDD +P S VVL+ Sbjct: 165767 LGQCQGNQAAEGEAVRGYLDDSVMP*VSIILALPMVVLH 165883 >KN349117.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic scaffold scaffold27799, whole genome shotgun sequence Length = 81678 Score = 35.4 bits (80), Expect = 7.1, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 28/61 (45%) Frame = +2 Query: 167 LFYLALPPTVYEAVTKNIHESCMSQIGWNRIIVEKPFGRDLQSSDRLSNHISSLFREDQI 226 L Y +PP V A+ KN E C I W +IV K + ++L N + +F+ Sbjct: 14276 LLYYVIPPKVEIAMPKNHKEHCFPGIAW--LIVNKKYFKNLSRKPGFMNSAAQIFQTKSR 14449 Query: 227 Y 227 Y Sbjct: 14450 Y 14452 Database: genome.fa Posted date: Sep 15, 2015 12:21 AM Number of letters in database: 2,188,353,730 Number of sequences in database: 47,351 Lambda K H 0.321 0.138 0.418 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 47351 Number of Hits to DB: 1,358,080,851 Number of extensions: 20245090 Number of successful extensions: 61961 Number of sequences better than 10.0: 5 Number of HSP's gapped: 61956 Number of HSP's successfully gapped: 18 Length of query: 545 Length of database: 729,451,243 Length adjustment: 135 Effective length of query: 410 Effective length of database: 723,058,858 Effective search space: 296454131780 Effective search space used: 296454131780 Neighboring words threshold: 13 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 53 (25.0 bits)