TBLASTN 2.2.26 [Sep-21-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= SPP00001048_2.0 # Protein # Selenoprotein I (SelI) # Chicken (Gallus gallus) (400 letters) Database: genome.fa 47,351 sequences; 2,188,353,730 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value KN340711.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic... 150 2e-37 KN331790.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic... 105 1e-22 KN346607.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic... 62 3e-08 KN342138.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic... 59 2e-07 KN351449.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic... 54 1e-05 KN352410.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic... 49 4e-04 KN354452.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic... 38 1.0 KN345478.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic... 35 6.3 >KN340711.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic scaffold scaffold18434, whole genome shotgun sequence Length = 43185 Score = 150 bits (378), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 76/117 (64%), Positives = 82/117 (70%) Frame = +2 Query: 72 FYASAPDHQHVPNGVWVVVGLLNFIAYTLDGVDGKQARRTNSSTPLGELFDHGLDSWACV 131 F +A + VP GV + + A DGVDGKQARRTNSSTPLGELFDHGLDSWAC+ Sbjct: 5867 FLTAAEEWLAVPGGVQMCIS-----ACLPDGVDGKQARRTNSSTPLGELFDHGLDSWACM 6031 Query: 132 YFVVTVYSTFGRGSTGXXXXXXXXXXXXXXXXXILSHWEKYNTGILFLPWGYDISQV 188 YFVVTVYSTFGRGSTG ILSHWEKYNTGILFLPWGYDISQ+ Sbjct: 6032 YFVVTVYSTFGRGSTGVSVFVLYLLLWVVLFSFILSHWEKYNTGILFLPWGYDISQM 6202 Score = 117 bits (293), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 52/63 (82%), Positives = 60/63 (95%) Frame = +3 Query: 241 KAYKNNTLKHHSVYEIMLPLVSPVLLFALCTTWIFVSPMDILEVHPRLFYFMVGTAFANI 300 +AY+ NTLKHHS+YEIMLP +SPVLLFALCTTWIF+SP+DILE+HPRLFYFMVGTAFANI Sbjct: 12564 RAYRGNTLKHHSLYEIMLPFLSPVLLFALCTTWIFLSPLDILEIHPRLFYFMVGTAFANI 12743 Query: 301 SCQ 303 S + Sbjct: 12744 SVR 12752 Score = 89.0 bits (219), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 40/67 (59%), Positives = 49/67 (73%) Frame = +3 Query: 299 NISCQLIVCQMSSTRCQPLNWMLLPIALVLFMVMSGFAPSSEXXXXXXXXXXXXXAHIHY 358 ++ CQLIVCQMS+TRCQPLNWMLLP+A+V+FMV+ G AP +E AHIHY Sbjct: 13341 SLQCQLIVCQMSNTRCQPLNWMLLPLAVVVFMVICGLAPYNETVLLYTLTAVITVAHIHY 13520 Query: 359 GVVVVSQ 365 GV VVS+ Sbjct: 13521 GVCVVSE 13541 Score = 71.6 bits (174), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 36/42 (85%), Positives = 38/42 (90%) Frame = +1 Query: 189 TISIVYIVTAIVGVEAWYAPFLFNFLYRDLFTTMIIACALTV 230 TISIVYIVTAIVGVEAW+APFLFNFLYRDLFTTMI+ L V Sbjct: 8452 TISIVYIVTAIVGVEAWHAPFLFNFLYRDLFTTMILGKKLHV 8577 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 26/38 (68%), Positives = 33/38 (86%) Frame = +2 Query: 363 VSQLSRHFNIRPFSLKKPTPDULGMEEEKISLRSAEVL 400 V+QLS+HFNIRPFSLKK + D L +EE+KI L++AEVL Sbjct: 17834 VNQLSKHFNIRPFSLKKRSTD*LEVEEQKIGLQAAEVL 17947 Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 20/27 (74%), Positives = 25/27 (92%) Frame = +2 Query: 74 ASAPDHQHVPNGVWVVVGLLNFIAYTL 100 +SAPDH HVPN +W++VGLLNF+AYTL Sbjct: 5267 SSAPDHVHVPNRIWIMVGLLNFMAYTL 5347 Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust. Identities = 15/17 (88%), Positives = 16/17 (94%) Frame = +1 Query: 225 ACALTVTLPMSLYNFYK 241 CALTVTLPMS+YNFYK Sbjct: 11791 GCALTVTLPMSVYNFYK 11841 >KN331790.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic scaffold scaffold8879, whole genome shotgun sequence Length = 235895 Score = 105 bits (263), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 51/90 (56%), Positives = 58/90 (64%), Gaps = 2/90 (2%) Frame = -3 Query: 101 DGVDGKQARRTNSSTPLGELFDHGLDSWACVYFVVTVYSTFGRGS--TGXXXXXXXXXXX 158 D +DGK ARRT STPLGELFDHGLDSWA F+ +S RG+ TG Sbjct: 227217 DSIDGKHARRTQCSTPLGELFDHGLDSWATSIFIFNFFSLCSRGNEQTGFLLHKMFLSLS 227038 Query: 159 XXXXXXILSHWEKYNTGILFLPWGYDISQV 188 ++SHWEKYNTG+LFLPWGYDISQV Sbjct: 227037 IGLLNFMVSHWEKYNTGVLFLPWGYDISQV 226948 Score = 65.9 bits (159), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 29/61 (47%), Positives = 42/61 (68%) Frame = -3 Query: 240 YKAYKNNTLKHHSVYEIMLPLVSPVLLFALCTTWIFVSPMDILEVHPRLFYFMVGTAFAN 299 ++AY TLK S Y+ +PLVSP+LLF L + W+ +SP DIL R+F++M+G F+N Sbjct: 193329 FRAYLKKTLKRDSFYDGCVPLVSPILLFTLISIWVTLSPCDILAKETRMFFWMLGVTFSN 193150 Query: 300 I 300 I Sbjct: 193149 I 193147 Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 36/62 (58%) Frame = -1 Query: 303 QLIVCQMSSTRCQPLNWMLLPIALVLFMVMSGFAPSSEXXXXXXXXXXXXXAHIHYGVVV 362 ++I+CQMS+TR + +W L P+ALV++ ++G E AH+HYG+ V Sbjct: 187919 RMIICQMSNTRPKVFHWFLFPLALVVYTAVTGQLGRMEPMVLALFNVFVTAAHVHYGICV 187740 Query: 363 VS 364 V+ Sbjct: 187739 VN 187734 >KN346607.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic scaffold scaffold24747, whole genome shotgun sequence Length = 223457 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 29/44 (65%), Positives = 33/44 (75%) Frame = -3 Query: 86 VWVVVGLLNFIAYTLDGVDGKQARRTNSSTPLGELFDHGLDSWA 129 + GL FI +LD +DGKQARRTNSSTPLGELFDHG DS + Sbjct: 57909 IACACGL--FIYQSLDAIDGKQARRTNSSTPLGELFDHGCDSLS 57784 Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust. Identities = 21/75 (28%), Positives = 36/75 (48%) Frame = -1 Query: 4 VTAEQLAGFSKYKYSAVDSNPLSLYVMHPFWNTIVKIFPTWLAPNLITFSGFLLLVFNFF 63 ++ QL ++KY + + L +M +W +V P W+APNLIT G L+ + Sbjct: 71159 LSKHQLKRLEEHKYQSSGRSLLE-PLMQGYWEWLVGRVPAWIAPNLITIVGLLINICTTL 70983 Query: 64 LMAYFDPDFYASAPD 78 ++ Y+ P D Sbjct: 70982 ILVYYCPTATEQVRD 70938 >KN342138.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic scaffold scaffold19996, whole genome shotgun sequence Length = 190504 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 28/40 (70%), Positives = 32/40 (80%) Frame = -3 Query: 88 VVVGLLNFIAYTLDGVDGKQARRTNSSTPLGELFDHGLDS 127 VGL F+ +LD +DGKQARRTNSS+PLGELFDHG DS Sbjct: 25523 CAVGL--FLYQSLDAIDGKQARRTNSSSPLGELFDHGCDS 25410 >KN351449.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic scaffold scaffold30585, whole genome shotgun sequence Length = 16546 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 23/28 (82%), Positives = 26/28 (92%) Frame = +2 Query: 13 SKYKYSAVDSNPLSLYVMHPFWNTIVKI 40 S +YSAVDSNPLSLYVMHPFWNT+VK+ Sbjct: 15395 SPSQYSAVDSNPLSLYVMHPFWNTVVKV 15478 Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 35/37 (94%), Positives = 35/37 (94%) Frame = +3 Query: 40 IFPTWLAPNLITFSGFLLLVFNFFLMAYFDPDFYASA 76 IFPTWLAPNLITF GFLLLVFNFFLMAYFDPDFYAS Sbjct: 15807 IFPTWLAPNLITFCGFLLLVFNFFLMAYFDPDFYASG 15917 >KN352410.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic scaffold scaffold31734, whole genome shotgun sequence Length = 83568 Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 20/39 (51%), Positives = 33/39 (84%) Frame = +3 Query: 38 VKIFPTWLAPNLITFSGFLLLVFNFFLMAYFDPDFYASA 76 ++I P W+APNL+TFSGF++L+ N+FL++++D D+ AS Sbjct: 83301 LQIVPQWVAPNLLTFSGFVMLLINYFLLSFYDWDYTASG 83417 Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust. Identities = 14/25 (56%), Positives = 22/25 (88%) Frame = +1 Query: 16 KYSAVDSNPLSLYVMHPFWNTIVKI 40 +YSAVD+NPLS++++ P W+ IVK+ Sbjct: 79684 QYSAVDTNPLSVHILQPMWDQIVKV 79758 >KN354452.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic scaffold scaffold34101, whole genome shotgun sequence Length = 353475 Score = 37.7 bits (86), Expect = 1.0, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 4/64 (6%) Frame = +3 Query: 70 PDFYASAPDHQHVPNGVWV---VVGLLNFIAYTLDGVDGKQARRTNSSTPLGE-LFDHGL 125 P FY + H H GVW+ VGL + +D ++G Q RRT LGE L+ G Sbjct: 141729 PSFYTRSCPHPHQAAGVWLKGKAVGLNEAESKFVDKLEGVQQRRTKMVRGLGEGLWRRG* 141908 Query: 126 DSWA 129 +WA Sbjct: 141909 GNWA 141920 >KN345478.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic scaffold scaffold23675, whole genome shotgun sequence Length = 71952 Score = 35.0 bits (79), Expect = 6.3, Method: Compositional matrix adjust. Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 1/50 (2%) Frame = -1 Query: 189 TISIVYIVTAI-VGVEAWYAPFLFNFLYRDLFTTMIIACALTVTLPMSLY 237 T+S+ Y+++ + VG+ A PF FNFL++D F + C T+ L SLY Sbjct: 54801 TLSLKYVISIV*VGITA-LLPFWFNFLWKDYFDSNWRVCKCTLDLYSSLY 54655 Database: genome.fa Posted date: Sep 15, 2015 12:21 AM Number of letters in database: 2,188,353,730 Number of sequences in database: 47,351 Lambda K H 0.328 0.140 0.451 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 47351 Number of Hits to DB: 1,177,733,401 Number of extensions: 19798834 Number of successful extensions: 130980 Number of sequences better than 10.0: 11 Number of HSP's gapped: 130956 Number of HSP's successfully gapped: 23 Length of query: 400 Length of database: 729,451,243 Length adjustment: 132 Effective length of query: 268 Effective length of database: 723,200,911 Effective search space: 193817844148 Effective search space used: 193817844148 Neighboring words threshold: 13 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 52 (24.6 bits)