TBLASTN 2.2.26 [Sep-21-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= tr|R4GGB2|R4GGB2_CHICK Glutathione peroxidase OS=Gallus gallus GN=GPX8 PE=3 SV=1 (210 letters) Database: genome.fa 47,351 sequences; 2,188,353,730 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value KN325713.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic... 173 4e-48 KN338580.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic... 112 7e-27 KN343115.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic... 101 4e-23 KN330210.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic... 76 3e-14 KN325303.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic... 58 4e-08 KN332733.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic... 57 2e-07 KN350882.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic... 46 4e-04 KN325192.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic... 41 0.028 KN347642.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic... 37 0.46 >KN325713.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic scaffold scaffold2594, whole genome shotgun sequence Length = 144888 Score = 173 bits (439), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 80/88 (90%), Positives = 86/88 (97%) Frame = +1 Query: 69 KATLVVNVASYCQHTDKNYIALQDLHREFGPSHFTVLAFPCNQFGESEPGSSQEIEAFAK 128 KA+LVVNVASYCQHTDKNYI LQ+LHREFGPSHFTVLAFPCNQFGESEP SSQEIE+FAK Sbjct: 106576 KASLVVNVASYCQHTDKNYIELQELHREFGPSHFTVLAFPCNQFGESEPSSSQEIESFAK 106755 Query: 129 GNYGVTFPVFHKIKILGSEAEPAFKFLI 156 GNYGVTFP+F+KIKILGSEAEPAFKFL+ Sbjct: 106756 GNYGVTFPIFYKIKILGSEAEPAFKFLV 106839 Score = 118 bits (296), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 57/71 (80%), Positives = 63/71 (88%) Frame = +3 Query: 1 MEPLTAAYPLKYSVPKARVFVVFLSMVFCTAVLCLLQLRFFKPKTKDFYSFEIKDSRGRI 60 MEPL A YPLK SVPKARVF+VFLSMV CT +LCLLQL+F KPK KDFYSFE+KDS+GRI Sbjct: 105789 MEPL-ATYPLKCSVPKARVFIVFLSMVLCTVMLCLLQLKFLKPKIKDFYSFEVKDSKGRI 105965 Query: 61 VSLEKYRGKAT 71 VSLEKYRGK + Sbjct: 105966 VSLEKYRGKVS 105998 Score = 81.3 bits (199), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 40/57 (70%), Positives = 42/57 (73%) Frame = +2 Query: 154 FLIDSSKKEPRWNFWKYLVSPEGKVVKFWRXXXXXXXXXXXXASLIRQIIMKKREDL 210 L DSSKKEPRWNFWKYLVSP GKV+KFWR ASLIRQIIMKK+EDL Sbjct: 108911 ILTDSSKKEPRWNFWKYLVSPGGKVMKFWRPEEPIENIKPEVASLIRQIIMKKKEDL 109081 >KN338580.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic scaffold scaffold16095, whole genome shotgun sequence Length = 178707 Score = 112 bits (281), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 61/142 (42%), Positives = 81/142 (57%), Gaps = 6/142 (4%) Frame = +2 Query: 45 TKDFYSFEIKDSRGRIVSLEKYRGKATLVVNVASYCQHTDKNYIALQDLHREFGPSHFTV 104 K Y F KD G VSLEKY+ ++ NVAS D NY D++ + + Sbjct: 178274 NKSIYYFHAKDIDGNEVSLEKYQRHVCIITNVASK*GKMDVNYTQFVDMYARYAERGLCI 178453 Query: 105 LAFPCNQFGESEPGSSQEIEAFAKGNYGVTFPVFHKIKILGSEAEPAFKFLIDSSKKEP- 163 LAFPCNQFG+ EPG + +I+AFA+ YGV F VF KI + G EA P +K+L D K Sbjct: 178454 LAFPCNQFGKQEPGDNAQIKAFAE-RYGVKFDVFSKIDVNGDEALPLWKWLKDQPKGRGT 178630 Query: 164 -----RWNFWKYLVSPEGKVVK 180 +WNF K+L+ +G+VVK Sbjct: 178631 LGNAIKWNFRKFLIDQQGQVVK 178696 >KN343115.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic scaffold scaffold21068, whole genome shotgun sequence Length = 77018 Score = 101 bits (252), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 46/80 (57%), Positives = 57/80 (71%) Frame = +2 Query: 77 ASYCQHTDKNYIALQDLHREFGPSHFTVLAFPCNQFGESEPGSSQEIEAFAKGNYGVTFP 136 AS C +TD +Y ALQ L R+ GP HF VLAFPCNQFG+ EP S++EIE FA+ YG TFP Sbjct: 5396 ASECGYTDSHYKALQQLQRDLGPYHFNVLAFPCNQFGQQEPDSNKEIENFARKTYGATFP 5575 Query: 137 VFHKIKILGSEAEPAFKFLI 156 +F K + G+ A FK+LI Sbjct: 5576 LFSKTAVSGAGANAVFKYLI 5635 Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 35/54 (64%) Frame = +2 Query: 157 DSSKKEPRWNFWKYLVSPEGKVVKFWRXXXXXXXXXXXXASLIRQIIMKKREDL 210 +S+ +EP WNFWKYLV+P+GKVVK W L+R II+KK+++L Sbjct: 8180 ESTGEEPTWNFWKYLVNPKGKVVKAWDSTVSIDEIKPYINELVRNIILKKKDEL 8341 >KN330210.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic scaffold scaffold7192, whole genome shotgun sequence Length = 293575 Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 42/102 (41%), Positives = 57/102 (55%) Frame = +3 Query: 41 FKPKTKDFYSFEIKDSRGRIVSLEKYRGKATLVVNVASYCQHTDKNYIALQDLHREFGPS 100 +K K Y KD G VSLEKYRG A ++ +VAS TD NY L D++ Sbjct: 44592 YKCSAKSIYESHAKDFDGSHVSLEKYRGYACIITSVASK*DKTDINYTQLVDMYAT*TER 44771 Query: 101 HFTVLAFPCNQFGESEPGSSQEIEAFAKGNYGVTFPVFHKIK 142 +LAFPCNQF + PG++ +I+AF NYGV + +I+ Sbjct: 44772 CLRILAFPCNQFKKQ*PGNNAQIKAFV-ANYGVKVDIHIQIE 44894 >KN325303.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic scaffold scaffold2189, whole genome shotgun sequence Length = 63301 Score = 58.2 bits (139), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 33/108 (30%), Positives = 52/108 (48%), Gaps = 1/108 (0%) Frame = -1 Query: 58 GRIVSLEKYRGKATLVVNVASYCQHTDKNYIALQDLHREFGPSHFTVLAFPCNQFGESEP 117 G ++L+ G+ LV NVAS T ++++ L +L +GP VL FPCNQFG P Sbjct: 30280 GEPLALDSLLGRVLLVSNVASL*GTTARDFVQLNELQERYGPRGLVVLGFPCNQFGHQVP 30101 Query: 118 GSSQEI-EAFAKGNYGVTFPVFHKIKILGSEAEPAFKFLIDSSKKEPR 164 G + E + G +P +L +PA + +++ PR Sbjct: 30100 GGAGPAHELPGRAGRGRCWPR----PLLSGTLQPAGLHVSRTARGGPR 29969 >KN332733.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic scaffold scaffold9928, whole genome shotgun sequence Length = 64086 Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 32/98 (32%), Positives = 42/98 (42%) Frame = +1 Query: 41 FKPKTKDFYSFEIKDSRGRIVSLEKYRGKATLVVNVASYCQHTDKNYIALQDLHREFGPS 100 P K FY +G V +RG+ L+ NVAS T ++Y L L + P Sbjct: 34981 MTPIAKSFYDLSAITLQGEKVDFNNFRGRVVLIENVASL*GTTVRDYTQLNQLQARY-PR 35157 Query: 101 HFTVLAFPCNQFGESEPGSSQEIEAFAKGNYGVTFPVF 138 VL FPCNQFG G S F + +T P + Sbjct: 35158 RLVVLGFPCNQFGYQVSGPSAVPSPFPSEGH*LTHPSY 35271 >KN350882.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic scaffold scaffold29685, whole genome shotgun sequence Length = 211812 Score = 46.2 bits (108), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 31/58 (53%) Frame = -2 Query: 62 SLEKYRGKATLVVNVASYCQHTDKNYIALQDLHREFGPSHFTVLAFPCNQFGESEPGS 119 SL RG ++ NVAS TD NY D++ + +LAFPCNQFG+ G+ Sbjct: 120869 SLPLLRGHVCIITNVASK*GKTDVNYTQFVDMYARYAERGLRILAFPCNQFGKQVGGA 120696 Score = 41.2 bits (95), Expect = 0.022, Method: Compositional matrix adjust. Identities = 21/45 (46%), Positives = 30/45 (66%) Frame = -1 Query: 116 EPGSSQEIEAFAKGNYGVTFPVFHKIKILGSEAEPAFKFLIDSSK 160 EPG + +I+AFA+ YGV F +F KI + G +A P +K+L D K Sbjct: 120120 EPGDNAQIKAFAE-RYGVKFDMFSKIDVNGDDALPLWKWLKDQPK 119989 >KN325192.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic scaffold scaffold2042, whole genome shotgun sequence Length = 57782 Score = 40.8 bits (94), Expect = 0.028, Method: Compositional matrix adjust. Identities = 18/34 (52%), Positives = 20/34 (58%) Frame = +2 Query: 90 LQDLHREFGPSHFTVLAFPCNQFGESEPGSSQEI 123 L L E GP VL FP NQFG+ EPG + EI Sbjct: 38309 LNALQSELGPYGLVVLGFPSNQFGKQEPGQNAEI 38410 >KN347642.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic scaffold scaffold26060, whole genome shotgun sequence Length = 65081 Score = 37.0 bits (84), Expect = 0.46, Method: Compositional matrix adjust. Identities = 15/28 (53%), Positives = 22/28 (78%) Frame = +2 Query: 44 KTKDFYSFEIKDSRGRIVSLEKYRGKAT 71 K DFY+F++ + RG++VSLEKYRG + Sbjct: 60482 KEVDFYTFKVVNIRGKLVSLEKYRGSVS 60565 Database: genome.fa Posted date: Sep 15, 2015 12:21 AM Number of letters in database: 2,188,353,730 Number of sequences in database: 47,351 Lambda K H 0.324 0.139 0.425 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 47351 Number of Hits to DB: 560,560,791 Number of extensions: 8405990 Number of successful extensions: 51102 Number of sequences better than 10.0: 10 Number of HSP's gapped: 51095 Number of HSP's successfully gapped: 14 Length of query: 210 Length of database: 729,451,243 Length adjustment: 124 Effective length of query: 86 Effective length of database: 723,579,719 Effective search space: 62227855834 Effective search space used: 62227855834 Neighboring words threshold: 13 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 49 (23.5 bits)