TBLASTN 2.2.26 [Sep-21-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= SPP00001030_2.0 # Protein # Iodothyronine deiodinase 1 (DI1) # Chicken (Gallus gallus) (246 letters) Database: genome.fa 47,351 sequences; 2,188,353,730 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value KN334575.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic... 156 1e-41 KN323949.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic... 135 3e-34 KN327708.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic... 120 5e-29 KN337902.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic... 34 4.6 >KN334575.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic scaffold scaffold11882, whole genome shotgun sequence Length = 256715 Score = 156 bits (395), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 78/165 (47%), Positives = 104/165 (63%), Gaps = 2/165 (1%) Frame = +3 Query: 84 AHEGRPAPNTPVVALNGEMQ-HLFSFMRDNRPLILNFGSCTUPSFMLKFDEFNKLVKDFS 142 AH G APN V+ L+G+ + L F R RPL+LNFGSCT P FM + F +L F Sbjct: 102204 AHVGARAPNPEVIRLDGQKRLRLLDFARGKRPLVLNFGSCT*PPFMARLRAFQRLAAHFL 102383 Query: 143 SIADFLIIYIEEAHAVDGWAFRNNVV-IKNHRSLEDRKTAAQFLQQKNPLCPVVLDTMEN 201 IADFL++YIEEAH DGW + I H+ L+DR AAQ +++ P CP+ +DTM+N Sbjct: 102384 DIADFLLVYIEEAHPSDGWVSSDAAYKIPKHQCLQDRLRAAQLMREGAPGCPLAVDTMDN 102563 Query: 202 LSSSKYAALPERLYILQAGNVIYKGGVGPWNYHPQEIRAVLEKLK 246 SS+ Y A ERLYI+Q V+Y+GG GP Y E+R+ L++ K Sbjct: 102564 ASSAAYGAYFERLYIVQEERVMYQGGRGPEGYKISELRSWLDQYK 102698 >KN323949.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic scaffold scaffold734, whole genome shotgun sequence Length = 504704 Score = 135 bits (340), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 60/91 (65%), Positives = 72/91 (79%) Frame = +2 Query: 20 SVVVGKTMMILFPDTTKRYILKLGEKSRMNQNPKFSYENWGPTFFSFQYLLFVLKVKWRR 79 +GK +MILFP+ KR+ILKLG+KS + +N KFSYENWGPTFFSF+YLLFVLKVKW+R Sbjct: 420446 CTAIGKILMILFPEAVKRHILKLGQKSSIARNSKFSYENWGPTFFSFRYLLFVLKVKWKR 420625 Query: 80 LEDEAHEGRPAPNTPVVALNGEMQHLFSFMR 110 LEDEA EG APNTPV L G+ H+ FM+ Sbjct: 420626 LEDEAFEGHAAPNTPVADLEGKAHHILDFMQ 420718 Score = 121 bits (303), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 54/68 (79%), Positives = 64/68 (94%) Frame = +3 Query: 158 VDGWAFRNNVVIKNHRSLEDRKTAAQFLQQKNPLCPVVLDTMENLSSSKYAALPERLYIL 217 +DGWAF+NN+VIKNH++LEDRK AAQFL +KNPLCPVV+DTMENLSSSKYAALPERLY+L Sbjct: 424935 LDGWAFKNNIVIKNHQNLEDRKMAAQFLLKKNPLCPVVVDTMENLSSSKYAALPERLYLL 425114 Query: 218 QAGNVIYK 225 + G V+YK Sbjct: 425115 REGKVVYK 425138 Score = 85.5 bits (210), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 39/46 (84%), Positives = 44/46 (95%) Frame = +1 Query: 112 NRPLILNFGSCTUPSFMLKFDEFNKLVKDFSSIADFLIIYIEEAHA 157 NRPL+LNFGSCT PSF+LKFDEFNKLV+DF+ IADFL+IYIEEAHA Sbjct: 423313 NRPLVLNFGSCT*PSFLLKFDEFNKLVEDFNPIADFLLIYIEEAHA 423450 Score = 46.6 bits (109), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 18/22 (81%), Positives = 20/22 (90%) Frame = +1 Query: 225 KGGVGPWNYHPQEIRAVLEKLK 246 +GG GPWN HPQEIRA+LEKLK Sbjct: 425974 QGGAGPWNCHPQEIRAILEKLK 426039 >KN327708.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic scaffold scaffold4627, whole genome shotgun sequence Length = 83914 Score = 120 bits (301), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 64/152 (42%), Positives = 90/152 (59%), Gaps = 7/152 (4%) Frame = +3 Query: 100 GEMQHLFSFMRDNRPLILNFGSCTUPSFMLKFDEFNKLVKDFSSIADFLIIYIEEAHAVD 159 G HL F RPL++NFGS T P F + F+KLV++FS +ADFL++YI+EAH D Sbjct: 32760 GSKCHLLDFANSERPLVVNFGSAT*PPFTSQLSAFSKLVEEFSGVADFLLVYIDEAHPSD 32939 Query: 160 GWAF----RNNVVIKNHRSLEDRKTAAQFLQQK---NPLCPVVLDTMENLSSSKYAALPE 212 GWA ++ +K H++ EDR AA L Q+ P C VV D M+N ++ Y E Sbjct: 32940 GWAAPGISPSSFEVKKHKNQEDRCAAAHQLLQRFSLPPQCQVVADCMDNNANVAYGVSFE 33119 Query: 213 RLYILQAGNVIYKGGVGPWNYHPQEIRAVLEK 244 R+ I+Q + Y GG GP+ Y QE++ LE+ Sbjct: 33120 RVCIVQRQKIAYLGGKGPFFYSLQEVQLWLEQ 33215 >KN337902.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic scaffold scaffold15435, whole genome shotgun sequence Length = 91497 Score = 34.3 bits (77), Expect = 4.6, Method: Compositional matrix adjust. Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 2/50 (4%) Frame = -2 Query: 190 PLCPVVLDTMENLSSSKYAALPERLYILQAGNVIYKG--GVGPWNYHPQE 237 P+CPV + +E S++A P RL G G+GPWN+HP + Sbjct: 30530 PICPVPI--IEGARHSEWAGSPWRLTQDHCGQDALDQAYGIGPWNWHPSQ 30387 Database: genome.fa Posted date: Sep 15, 2015 12:21 AM Number of letters in database: 2,188,353,730 Number of sequences in database: 47,351 Lambda K H 0.323 0.138 0.423 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 47351 Number of Hits to DB: 623,870,460 Number of extensions: 9529931 Number of successful extensions: 36451 Number of sequences better than 10.0: 4 Number of HSP's gapped: 36447 Number of HSP's successfully gapped: 7 Length of query: 246 Length of database: 729,451,243 Length adjustment: 126 Effective length of query: 120 Effective length of database: 723,485,017 Effective search space: 86818202040 Effective search space used: 86818202040 Neighboring words threshold: 13 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 50 (23.9 bits)