TBLASTN 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= SPP00001055_2.0 # Protein # Selenoprotein P (SelP) # Chicken
(Gallus gallus)
         (251 letters)

Database: genome.fa 
           47,351 sequences; 2,188,353,730 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KN331503.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic...   119   2e-28
KN350865.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic...    72   8e-18

>KN331503.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic scaffold
             scaffold8650, whole genome shotgun sequence
          Length = 101310

 Score =  119 bits (297), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 57/71 (80%), Positives = 64/71 (90%)
 Frame = +1

Query: 65    LEDLRVKLENEGLVNISYVVVNHQSPHSQKKFHLLQESVSDHITVYQQDDHQADVWTTLN 124
             LEDLRVKLEN+GLVNISYVVVNHQ   SQ+K HLL++ VS+HI VYQQD++Q DVWTTLN
Sbjct: 33829 LEDLRVKLENDGLVNISYVVVNHQGITSQEKIHLLRKEVSEHIVVYQQDENQPDVWTTLN 34008

Query: 125   GNKDDFLIYDR 135
             GNKDDFLIYDR
Sbjct: 34009 GNKDDFLIYDR 34041



 Score = 81.3 bits (199), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 36/42 (85%), Positives = 38/42 (90%)
 Frame = +1

Query: 133   YDRCGRLVYHLGLPYSFLSFQYVEEAIKIAYCENNCGNCSYT 174
             + RCGRLVYHLGLPYSFLSF YVEE+IKIAYCE NCGNCSY 
Sbjct: 34630 FIRCGRLVYHLGLPYSFLSFPYVEESIKIAYCEQNCGNCSYM 34755



 Score = 71.2 bits (173), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 39/70 (55%), Positives = 44/70 (62%), Gaps = 4/70 (5%)
 Frame = +2

Query: 1     MWAXXXXXXXXXXXXXXXTESQ----RCQEPPEWHIGEESPMLNARGSVAVVALLQASUY 56
             MWA               TESQ    RC+EPPEW+   + PMLN+RGSV VVALLQAS +
Sbjct: 30419 MWAGLVLALVLCLLPEGGTESQGSSARCKEPPEWYTAGQDPMLNSRGSVTVVALLQAS*H 30598

Query: 57    LCLLQASRLE 66
             LCLLQASR E
Sbjct: 30599 LCLLQASR*E 30628


>KN350865.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic scaffold
            scaffold29870, whole genome shotgun sequence
          Length = 50053

 Score = 72.4 bits (176), Expect(2) = 8e-18,   Method: Compositional matrix adjust.
 Identities = 32/77 (41%), Positives = 45/77 (58%)
 Frame = -2

Query: 59   LLQASRLEDLRVKLENEGLVNISYVVVNHQSPHSQKKFHLLQESVSDHITVYQQDDHQAD 118
            L     L  LR KL   G+ N+SY++VN ++P S+  +  L+      + VYQQ     D
Sbjct: 6927 LFPPPSLGSLREKLSRRGVANVSYMIVNEKAPLSRAMYWELKRQAPTGVPVYQQSILDPD 6748

Query: 119  VWTTLNGNKDDFLIYDR 135
            +W  L+G+KDDFLIYDR
Sbjct: 6747 IWQILDGDKDDFLIYDR 6697



 Score = 41.2 bits (95), Expect(2) = 8e-18,   Method: Compositional matrix adjust.
 Identities = 22/41 (53%), Positives = 24/41 (58%)
 Frame = -1

Query: 24   CQEPPEWHIGEESPMLNARGSVAVVALLQASUYLCLLQASR 64
            CQ  P W +    PM  A G V VVALL+AS   CL QASR
Sbjct: 7144 CQPAPLWRVNGTVPMDEALGQVTVVALLKAS*QFCLKQASR 7022



 Score = 56.2 bits (134), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 23/37 (62%), Positives = 27/37 (72%)
 Frame = -1

Query: 135  RCGRLVYHLGLPYSFLSFQYVEEAIKIAYCENNCGNC 171
            RCGRLV+H+ LPYSFL F YVE A+   Y  + CGNC
Sbjct: 4987 RCGRLVFHISLPYSFLHFPYVESAVHFTYNRDYCGNC 4877


  Database: genome.fa
    Posted date:  Sep 15, 2015 12:21 AM
  Number of letters in database: 2,188,353,730
  Number of sequences in database:  47,351
  
Lambda     K      H
   0.318    0.132    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 47351
Number of Hits to DB: 609,445,324
Number of extensions: 8089371
Number of successful extensions: 33197
Number of sequences better than 10.0: 2
Number of HSP's gapped: 33195
Number of HSP's successfully gapped: 6
Length of query: 251
Length of database: 729,451,243
Length adjustment: 126
Effective length of query: 125
Effective length of database: 723,485,017
Effective search space: 90435627125
Effective search space used: 90435627125
Neighboring words threshold: 13
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)