TBLASTN 2.2.26 [Sep-21-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= SPP00002941_2.0 # Protein # selenocysteine lyase (SCLY) # Human (Homo sapiens) (453 letters) Database: genome.fa 47,351 sequences; 2,188,353,730 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value KN338129.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic... 96 8e-19 KN334670.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic... 52 5e-05 >KN338129.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic scaffold scaffold15673, whole genome shotgun sequence Length = 84267 Score = 95.5 bits (236), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 45/74 (60%), Positives = 58/74 (78%) Frame = -2 Query: 198 LVTIMLANNETGIVMPVPEISQRIKALNQERVAAGLPPILVHTDAAQALGKQRVDVEDLG 257 L T++L +N P+PE+ QRI+ LN++R+ +G+P ILVHTDAAQ +GK RVDVEDLG Sbjct: 65042 LETLLLRDN-VFFCQPIPELCQRIRILNRKRMTSGMPKILVHTDAAQMIGKGRVDVEDLG 64866 Query: 258 VDFLTIVGHKFYGP 271 VD+LTIVGHK Y P Sbjct: 64865 VDYLTIVGHKVYLP 64824 Score = 74.7 bits (182), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 35/46 (76%), Positives = 41/46 (89%) Frame = -2 Query: 167 QVAAVTFVPVSKVSGQAEVDDILAAVRPTTRLVTIMLANNETGIVM 212 +A TFVPVSKV+GQAEVDDI+ AVRPTT LV+IMLANNETG++M Sbjct: 65615 WLAEATFVPVSKVTGQAEVDDIIGAVRPTTCLVSIMLANNETGVIM 65478 Score = 74.3 bits (181), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 35/48 (72%), Positives = 44/48 (91%) Frame = -1 Query: 403 QPSPVLLSYGVPFDVARNALRLSVGRSTTRAEVDLVVQDLKQAVAQLE 450 +PS +LLS G+P+DVA+NALRLSVGR+TT+ +VDLVV DLK+AVAQLE Sbjct: 55245 RPSSILLSCGIPYDVAQNALRLSVGRNTTQHDVDLVVDDLKEAVAQLE 55102 Score = 70.1 bits (170), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 36/61 (59%), Positives = 40/61 (65%) Frame = -1 Query: 19 APAPAASQPSGCGKHNSPERKVYMDYNATTPLEPEVIQAMTKAMWEAWGNPSSPYSAGRK 78 +P S P C RKVYMDYNATTPL EVIQ +T+AM EAWGNPSS Y AGR Sbjct: 71193 SPVLTLSAPVSC-------RKVYMDYNATTPLALEVIQTVTEAMQEAWGNPSSTYKAGRS 71035 Query: 79 A 79 + Sbjct: 71034 S 71032 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 31/69 (44%), Positives = 43/69 (62%), Gaps = 1/69 (1%) Frame = -2 Query: 102 IFTSGGTESNNLVIHSVVKHFHANQT-SKGHTGGHHSPVKGAKPHFITSSVEHDSIRLPL 160 IF +NN +IH+ ++ F + + G HS +G PHF+TS+VEHDS+RLPL Sbjct: 66911 IFPLTSL*ANNFIIHTALRCFRESWVLGENGPGEKHSKPQGVAPHFVTSNVEHDSVRLPL 66732 Query: 161 EHLVEEQVA 169 EHLV E +A Sbjct: 66731 EHLVRENMA 66705 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 27/34 (79%), Positives = 30/34 (88%) Frame = -1 Query: 267 KFYGPRIGALYIRGLGEFTPLYPMLFGGGQERNF 300 +FY PRIGALY+RG G TPL+PMLFGGGQERNF Sbjct: 61503 QFYAPRIGALYVRGPGVATPLHPMLFGGGQERNF 61402 Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 26/34 (76%), Positives = 32/34 (94%) Frame = -2 Query: 76 GRKAKDIINAARESLAKMIGGKPQDIIFTSGGTE 109 GRKAK+ I+ ARESLA+M+GG+P+DIIFTSGGTE Sbjct: 68600 GRKAKETISRARESLARMVGGQPEDIIFTSGGTE 68499 Score = 57.4 bits (137), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 26/47 (55%), Positives = 35/47 (74%) Frame = -3 Query: 342 LEAEFGQKRIHLNSQFPGTQRLPNTCNFSIRGPRLQGHVVLAQCRVL 388 L+A FG+++IH NS+F G++RL NTCNFSI G LQG+ V C +L Sbjct: 57040 LQAVFGKQKIHFNSRFSGSRRLCNTCNFSILGSGLQGNSVSQTCPML 56900 Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 21/29 (72%), Positives = 26/29 (89%) Frame = -3 Query: 315 KAAELVTQNCEAYEAHMRDVRDYLEERLE 343 +AAELV ++CE YEAHM++VRDYLE RLE Sbjct: 58072 QAAELVNKSCEVYEAHMQEVRDYLEARLE 57986 Score = 41.2 bits (95), Expect = 0.084, Method: Compositional matrix adjust. Identities = 18/32 (56%), Positives = 24/32 (75%) Frame = -1 Query: 378 GHVVLAQCRVLMASVGAACHSDHGDQPSPVLL 409 GH VL+ C+ L+ASVGAACHS+ GD +L+ Sbjct: 56535 GHKVLSCCKTLLASVGAACHSEKGDDQ*VILV 56440 >KN334670.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic scaffold scaffold11980, whole genome shotgun sequence Length = 185535 Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 21/37 (56%), Positives = 28/37 (75%) Frame = -3 Query: 236 ILVHTDAAQALGKQRVDVEDLGVDFLTIVGHKFYGPR 272 + HTDAAQA+GK VDV D+ +D ++I GHK YGP+ Sbjct: 138235 VFFHTDAAQAIGKVPVDVNDMKIDLMSISGHKIYGPK 138125 Score = 43.1 bits (100), Expect = 0.026, Method: Compositional matrix adjust. Identities = 21/41 (51%), Positives = 24/41 (58%) Frame = -2 Query: 287 LYPMLFGGGQERNFRPGTENTPMIAGLGKAAELVTQNCEAY 327 L P+ GGGQER R GT TP+ GLG A E+ Q E Y Sbjct: 136166 LEPLQSGGGQERGMRSGTVPTPLAVGLGAACEVAQQEMEVY 136044 Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust. Identities = 17/29 (58%), Positives = 22/29 (75%) Frame = -3 Query: 88 ESLAKMIGGKPQDIIFTSGGTESNNLVIH 116 + +A +IG P++IIFTSG TESNNL I Sbjct: 149923 QQVASLIGADPREIIFTSGATESNNLAIK 149837 Database: genome.fa Posted date: Sep 15, 2015 12:21 AM Number of letters in database: 2,188,353,730 Number of sequences in database: 47,351 Lambda K H 0.317 0.133 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 47351 Number of Hits to DB: 1,155,198,363 Number of extensions: 19371347 Number of successful extensions: 118259 Number of sequences better than 10.0: 7 Number of HSP's gapped: 118199 Number of HSP's successfully gapped: 18 Length of query: 453 Length of database: 729,451,243 Length adjustment: 133 Effective length of query: 320 Effective length of database: 723,153,560 Effective search space: 231409139200 Effective search space used: 231409139200 Neighboring words threshold: 13 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 52 (24.6 bits)