TBLASTN 2.2.26 [Sep-21-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= SPP00000146_2.0 # Protein # tRNA Sec 1 associated protein 1 (SECp43) # Human (Homo sapiens) (287 letters) Database: genome.fa 47,351 sequences; 2,188,353,730 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value KN339572.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic... 94 2e-19 KN351604.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic... 64 2e-09 KN346001.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic... 54 4e-06 KN348027.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic... 49 2e-04 KN326208.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic... 39 0.29 KN326612.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic... 39 0.30 KN333807.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic... 38 0.40 KN339491.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic... 38 0.49 KN328534.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic... 38 0.57 KN330268.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic... 37 1.0 KN344574.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic... 35 2.7 >KN339572.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic scaffold scaffold17171, whole genome shotgun sequence Length = 220695 Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 44/45 (97%), Positives = 45/45 (100%) Frame = -2 Query: 93 SPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSK 137 SPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ+GVSK Sbjct: 121757 SPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQSGVSK 121623 Score = 86.3 bits (212), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 39/50 (78%), Positives = 45/50 (90%) Frame = -1 Query: 128 VVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPKA 177 ++ + + +GYGFVKFTDELEQKRALTECQGAVGLGSKP+RLSVAIPKA Sbjct: 119727 IIHSVSYLCRGYGFVKFTDELEQKRALTECQGAVGLGSKPIRLSVAIPKA 119578 Score = 82.4 bits (202), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 36/45 (80%), Positives = 42/45 (93%) Frame = -3 Query: 243 DPMPQLDVTEANKEFMEQSEELYDALMDCHWQPLDTVSSEIPAMM 287 DP PQ+DV+EANK+F+EQSEELYDAL D HWQPLDTVSSEIPA++ Sbjct: 113170 DPAPQIDVSEANKQFVEQSEELYDALTDSHWQPLDTVSSEIPAIL 113036 Score = 75.5 bits (184), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 33/36 (91%), Positives = 34/36 (94%) Frame = -3 Query: 43 IPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 78 IPAGYCFVEFADLATAEKCLHKINGKPLPGATP + Sbjct: 125560 IPAGYCFVEFADLATAEKCLHKINGKPLPGATPVSK 125453 Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 35/58 (60%), Positives = 42/58 (72%), Gaps = 3/58 (5%) Frame = -1 Query: 10 LEPYMDENFISRAFATMGETVMSVKIIRNRLTG---IPAGYCFVEFADLATAEKCLHK 64 LEPYMDENF+SRAFATMGE V+SVKIIRNRLTG + A F + + + + CL K Sbjct: 126780 LEPYMDENFVSRAFATMGELVLSVKIIRNRLTG*AFVHASRLFEDMSLVFSCAACLKK 126607 Score = 40.8 bits (94), Expect = 0.063, Method: Compositional matrix adjust. Identities = 17/17 (100%), Positives = 17/17 (100%) Frame = -2 Query: 76 AKRFKLNYATYGKQPDN 92 AKRFKLNYATYGKQPDN Sbjct: 122984 AKRFKLNYATYGKQPDN 122934 >KN351604.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic scaffold scaffold30748, whole genome shotgun sequence Length = 109911 Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 31/42 (73%), Positives = 35/42 (83%) Frame = +2 Query: 243 DPMPQLDVTEANKEFMEQSEELYDALMDCHWQPLDTVSSEIP 284 DP LDV E NK+FME+SEELYDALM+CHWQPLD V+ EIP Sbjct: 85115 DPQLFLDVDEMNKQFMERSEELYDALMNCHWQPLD-VTCEIP 85237 Score = 57.0 bits (136), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 25/48 (52%), Positives = 35/48 (72%) Frame = +2 Query: 94 PEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGF 141 P+YS+FVG+LTP+VDD LY++F+K YPSC K+ D G S+ Y + Sbjct: 79304 PDYSIFVGELTPEVDDFQLYDYFLKRYPSCIDCKIATDLLGYSR*YLY 79447 Score = 53.9 bits (128), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 22/43 (51%), Positives = 31/43 (72%) Frame = +3 Query: 134 GVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPK 176 G+ +GY FV+F ++ +Q RAL +CQ A GLG K +RLS+ I K Sbjct: 80364 GICRGYAFVRFGEQGDQMRALQDCQNAAGLGGKRIRLSIGISK 80492 >KN346001.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic scaffold scaffold23959, whole genome shotgun sequence Length = 247249 Score = 53.9 bits (128), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 44/142 (30%), Positives = 70/142 (49%), Gaps = 7/142 (4%) Frame = -1 Query: 45 AGYCFVEF-----ADLATAEKCLHKINGKPLPGATPAKRFKLNYAT-YGKQPDNSPEYSL 98 AGY FVEF AD A + K+ GKP+ ++N A+ + K D ++ Sbjct: 170086 AGYGFVEFLSEEDADYAIKIMNMIKLYGKPI---------RVNKASAHNKNLDVGA--NI 169940 Query: 99 FVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLD-QTGVSKGYGFVKFTDELEQKRALTEC 157 F+G+L P++D+ +LY+ F + K++ D TG SKGY F+ F + A E Sbjct: 169939 FIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFA-SFDASDAAIEA 169763 Query: 158 QGAVGLGSKPVRLSVAIPKASR 179 L ++P+ +S A K S+ Sbjct: 169762 MNGQYLCNRPITVSYAFKKDSK 169697 Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 21/70 (30%), Positives = 41/70 (58%) Frame = -1 Query: 1 MAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEK 60 + A++++G+L+P +DE + F+ G + + KI+R+ TG GY F+ FA ++ Sbjct: 169954 VGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDA 169775 Query: 61 CLHKINGKPL 70 + +NG+ L Sbjct: 169774 AIEAMNGQYL 169745 >KN348027.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic scaffold scaffold26600, whole genome shotgun sequence Length = 24419 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 33/83 (39%), Positives = 46/83 (55%), Gaps = 9/83 (10%) Frame = +1 Query: 95 EYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLD-QTGVSKGYGFVKFTDELEQKRA 153 ++ +F GDL +V+D +L F + YPS KV+ D +TG +KGYGFV F D + RA Sbjct: 18586 DFRIFCGDLGNEVNDDILARAFSR-YPSFLKAKVIRDKRTGKTKGYGFVSFKDPNDYVRA 18762 Query: 154 LTE-----CQGA---VGLGSKPV 168 + E C+G G G PV Sbjct: 18763 MREMNGIFCRGEPRFAGCGGAPV 18831 >KN326208.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic scaffold scaffold3137, whole genome shotgun sequence Length = 183033 Score = 38.5 bits (88), Expect = 0.29, Method: Compositional matrix adjust. Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 2/92 (2%) Frame = +1 Query: 90 PDN-SPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLD-QTGVSKGYGFVKFTDE 147 P N S + +F+ +L D D+G+L++ F + + KV+ D T KG+GFV T+ Sbjct: 58402 PGNASSGWCIFIYNLGQDADEGILWQMF-GPFGAVTNVKVIRDFNTNKCKGFGFVTMTNY 58578 Query: 148 LEQKRALTECQGAVGLGSKPVRLSVAIPKASR 179 E A+ G LG K +++S K+ + Sbjct: 58579 EEAAMAIASLNGYR-LGDKILQVSFKTNKSHK 58671 >KN326612.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic scaffold scaffold3534, whole genome shotgun sequence Length = 61707 Score = 38.5 bits (88), Expect = 0.30, Method: Compositional matrix adjust. Identities = 27/62 (43%), Positives = 32/62 (51%), Gaps = 3/62 (4%) Frame = +1 Query: 94 PEYSLFVGDLTPDVDDGMLYEFFVKVYP--SCRGGKVVLDQ-TGVSKGYGFVKFTDELEQ 150 P SL+VGDL PDV + MLYE F P S R V D T S GY +V F + Sbjct: 24208 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIR---VCRDMITRRSLGYAYVNFQQPADG 24378 Query: 151 KR 152 +R Sbjct: 24379 ER 24384 Score = 38.1 bits (87), Expect = 0.38, Method: Compositional matrix adjust. Identities = 19/58 (32%), Positives = 33/58 (56%) Frame = +1 Query: 3 ASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEK 60 ASL++GDL P + E + F+ G ++S+++ R+ +T GY +V F A E+ Sbjct: 24214 ASLYVGDLHPDVTEAMLYEKFSPAGP-ILSIRVCRDMITRRSLGYAYVNFQQPADGER 24384 Score = 35.4 bits (80), Expect = 3.2, Method: Compositional matrix adjust. Identities = 19/51 (37%), Positives = 32/51 (62%) Frame = +3 Query: 129 VLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPKASR 179 V+ + G SKG+GFV F+ E +A+TE G + + +KP+ +++A K R Sbjct: 40371 VMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRI-VATKPLYVALAQRKEER 40520 >KN333807.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic scaffold scaffold11060, whole genome shotgun sequence Length = 137949 Score = 38.1 bits (87), Expect = 0.40, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 33/51 (64%) Frame = -2 Query: 129 VLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPKASR 179 V+ + G SKG+GFV F+ E +A+TE G + +GSKP+ +++A K R Sbjct: 54635 VMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRI-VGSKPLYVALAQRKEER 54486 Score = 37.4 bits (85), Expect = 0.73, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 30/59 (50%), Gaps = 1/59 (1%) Frame = -3 Query: 94 PEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQK 151 P SL+VGDL PDV + MLYE F P +V D T S GY +V F + K Sbjct: 67018 PMASLYVGDLHPDVTEAMLYEKFSPAGPVL-SIRVCRDMITRRSLGYAYVNFQQPADGK 66845 Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust. Identities = 18/50 (36%), Positives = 30/50 (60%) Frame = -3 Query: 3 ASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEF 52 ASL++GDL P + E + F+ G V+S+++ R+ +T GY +V F Sbjct: 67012 ASLYVGDLHPDVTEAMLYEKFSPAGP-VLSIRVCRDMITRRSLGYAYVNF 66866 >KN339491.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic scaffold scaffold17122, whole genome shotgun sequence Length = 275420 Score = 37.7 bits (86), Expect = 0.49, Method: Compositional matrix adjust. Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 1/85 (1%) Frame = +3 Query: 96 YSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLD-QTGVSKGYGFVKFTDELEQKRAL 154 + +FV +L+PD D+ +L++ F + + KV+ D T KG+GFV T+ E A+ Sbjct: 47652 WCIFVYNLSPDSDESVLWQLF-GPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 47828 Query: 155 TECQGAVGLGSKPVRLSVAIPKASR 179 G LG + +++S K + Sbjct: 47829 ASLNG-YRLGDRVLQVSFKTNKTHK 47900 >KN328534.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic scaffold scaffold5524, whole genome shotgun sequence Length = 177103 Score = 37.7 bits (86), Expect = 0.57, Method: Compositional matrix adjust. Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 1/85 (1%) Frame = +2 Query: 96 YSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLD-QTGVSKGYGFVKFTDELEQKRAL 154 + +FV +L PD D+ +L++ F + + KV+ D T KG+GFV T+ E A+ Sbjct: 69260 WCIFVYNLAPDADESILWQMF-GPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 69436 Query: 155 TECQGAVGLGSKPVRLSVAIPKASR 179 G LG + +++S K + Sbjct: 69437 ASLNG-YRLGDRVLQVSFKTNKTHK 69508 >KN330268.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic scaffold scaffold7332, whole genome shotgun sequence Length = 146040 Score = 37.0 bits (84), Expect = 1.0, Method: Compositional matrix adjust. Identities = 25/60 (41%), Positives = 31/60 (51%), Gaps = 2/60 (3%) Frame = +1 Query: 94 PEYSLFVGDLTPDVDDGMLYEFFVKVYP--SCRGGKVVLDQTGVSKGYGFVKFTDELEQK 151 P SL+VGDL PDV + MLYE F P S R + V T S GY ++ F + K Sbjct: 33310 PLASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDV--ATRRSLGYAYINFQQPADGK 33483 Score = 35.4 bits (80), Expect = 2.7, Method: Compositional matrix adjust. Identities = 19/51 (37%), Positives = 32/51 (62%) Frame = +3 Query: 129 VLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPKASR 179 V+ + G SKG+GFV F+ E +A+TE G + + +KP+ +++A K R Sbjct: 44670 VMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRI-VSTKPLYVALAQRKEER 44819 Score = 35.0 bits (79), Expect = 3.5, Method: Compositional matrix adjust. Identities = 17/50 (34%), Positives = 29/50 (58%) Frame = +1 Query: 3 ASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEF 52 ASL++GDL P + E + F+ G +MS+++ R+ T GY ++ F Sbjct: 33316 ASLYVGDLHPDVTEAMLYEKFSPAGP-IMSIRVCRDVATRRSLGYAYINF 33462 >KN344574.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic scaffold scaffold22552, whole genome shotgun sequence Length = 224637 Score = 35.4 bits (80), Expect = 2.7, Method: Compositional matrix adjust. Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 5/75 (6%) Frame = -1 Query: 2 AASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLAT---- 57 +++L++G+L Y E I F+ G+ V + + +++ P G+CFVE+ +A Sbjct: 28497 SSTLYVGNLSFYTTEEQIQELFSKCGD-VKRIVMGLDKIKKTPCGFCFVEYLVVAARGAS 28321 Query: 58 -AEKCLHKINGKPLP 71 A CLH G +P Sbjct: 28320 RARCCLH---GHAVP 28285 Database: genome.fa Posted date: Sep 15, 2015 12:21 AM Number of letters in database: 2,188,353,730 Number of sequences in database: 47,351 Lambda K H 0.317 0.135 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 47351 Number of Hits to DB: 628,556,457 Number of extensions: 7836698 Number of successful extensions: 28438 Number of sequences better than 10.0: 11 Number of HSP's gapped: 28437 Number of HSP's successfully gapped: 25 Length of query: 287 Length of database: 729,451,243 Length adjustment: 128 Effective length of query: 159 Effective length of database: 723,390,315 Effective search space: 115019060085 Effective search space used: 115019060085 Neighboring words threshold: 13 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 50 (23.9 bits)