TBLASTN 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= SPP00002937_2.0 # Protein # ribosomal protein L30 (RPL30) #
Human (Homo sapiens)
         (115 letters)

Database: genome.fa 
           47,351 sequences; 2,188,353,730 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

JRWT01295200.1 Gavialis gangeticus C16438732_1, whole genome sho...    99   1e-23
KN359763.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic...    98   3e-23
KN328413.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic...    33   1.4  
KN356899.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic...    32   5.5  

>JRWT01295200.1 Gavialis gangeticus C16438732_1, whole genome shotgun sequence
          Length = 2634

 Score = 99.0 bits (245), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 45/46 (97%), Positives = 45/46 (97%)
 Frame = -1

Query: 55   LRKSEIEYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPG 100
             RKSEIEYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPG
Sbjct: 2469 FRKSEIEYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPG 2332



 Score = 34.7 bits (78), Expect = 0.48,   Method: Composition-based stats.
 Identities = 15/16 (93%), Positives = 15/16 (93%)
 Frame = -1

Query: 100 GDSDIIRSMPEQTGEK 115
           GDSDIIRSMPEQT EK
Sbjct: 822 GDSDIIRSMPEQTSEK 775


>KN359763.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic scaffold
             scaffold41199, whole genome shotgun sequence
          Length = 11700

 Score = 98.2 bits (243), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 49/49 (100%), Positives = 49/49 (100%)
 Frame = +1

Query: 8     KKSLESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALR 56
             KKSLESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALR
Sbjct: 10471 KKSLESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALR 10617


>KN328413.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic scaffold
             scaffold5405, whole genome shotgun sequence
          Length = 60933

 Score = 33.5 bits (75), Expect = 1.4,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
 Frame = +2

Query: 30    GYKQTLKMIRQGKAKLVILANNCPALRK-----SEIEYYAMLAKTGVHHYSGNNIELGTA 84
             GY    K  R   AKL   +   P L +     S+ +Y  +L++T +HH    ++ L  A
Sbjct: 31712 GYSHFSK*WRHLGAKLHWKSLGMPLLNEWFSFFSQ*DYIVLLSQTALHHICCGHLHLYKA 31891

Query: 85    CGKYYRVCTLAIIDP 99
               K+Y++  +A +DP
Sbjct: 31892 SSKHYQIRMVAALDP 31936


>KN356899.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic scaffold
             scaffold37262, whole genome shotgun sequence
          Length = 68345

 Score = 31.6 bits (70), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 4/87 (4%)
 Frame = -1

Query: 22    MKSGKY----VLGYKQTLKMIRQGKAKLVILANNCPALRKSEIEYYAMLAKTGVHHYSGN 77
              +SGK+    V+  KQ + + R  +A+ +    NC   +K E E  A  +K  V     N
Sbjct: 39128 FQSGKHLCR*VILLKQVIDIHRITRAEAI--TENC--YKKIEREL-ASSSKKNV*LPDFN 38964

Query: 78    NIELGTACGKYYRVCTLAIIDPGDSDI 104
             NI +  A  KYY++ +LA+I   D+D+
Sbjct: 38963 NIHIY*AIYKYYKISSLAVIQSNDTDL 38883


  Database: genome.fa
    Posted date:  Sep 15, 2015 12:21 AM
  Number of letters in database: 2,188,353,730
  Number of sequences in database:  47,351
  
Lambda     K      H
   0.317    0.132    0.372 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 47351
Number of Hits to DB: 250,858,338
Number of extensions: 2801566
Number of successful extensions: 10563
Number of sequences better than 10.0: 5
Number of HSP's gapped: 10563
Number of HSP's successfully gapped: 6
Length of query: 115
Length of database: 729,451,243
Length adjustment: 90
Effective length of query: 25
Effective length of database: 725,189,653
Effective search space: 18129741325
Effective search space used: 18129741325
Neighboring words threshold: 13
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)