TBLASTN 2.2.26 [Sep-21-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= SPP00000016_2.0 # Protein # Iodothyronine deiodinase 3 (DI3) # Human (Homo sapiens) (278 letters) Database: genome.fa 47,351 sequences; 2,188,353,730 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value KN334575.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic... 295 8e-90 KN327708.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic... 143 1e-36 KN323949.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic... 65 9e-10 KN345791.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic... 34 5.9 >KN334575.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic scaffold scaffold11882, whole genome shotgun sequence Length = 256715 Score = 295 bits (755), Expect = 8e-90, Method: Compositional matrix adjust. Identities = 143/238 (60%), Positives = 179/238 (75%) Frame = +3 Query: 33 LWLLDFLCIRKHFLGRRRRGQPEPEVELNSEGEEVPPDDPPICVSDDNRLCTLASLKAVW 92 LWLLDFLCIRK L P + E PPDDPP+CVSD NRL T SLKAVW Sbjct: 102012 LWLLDFLCIRKKVL------AGGPAAAAAAAAGEPPPDDPPLCVSDSNRLFTRESLKAVW 102173 Query: 93 HGQKLDFFKQAHEGGPAPNSEVVLPDGFQSQHILDYAQGNRPLVLNFGSCTUPPFMARMS 152 HG KLD FK AH G APN EV+ DG + +LD+A+G RPLVLNFGSCT PPFMAR+ Sbjct: 102174 HGHKLDLFKAAHVGARAPNPEVIRLDGQKRLRLLDFARGKRPLVLNFGSCT*PPFMARLR 102353 Query: 153 AFQRLVTKYQRDVDFLIIYIEEAHPSDGWVTTDSPYIIPQHRSLEDRVSAARVLQQGAPG 212 AFQRL + DFL++YIEEAHPSDGWV++D+ Y IP+H+ L+DR+ AA+++++GAPG Sbjct: 102354 AFQRLAAHFLDIADFLLVYIEEAHPSDGWVSSDAAYKIPKHQCLQDRLRAAQLMREGAPG 102533 Query: 213 CALVLDTMANSSSSAYGAYFERLYVIQSGTIMYQGGRGPDGYQVSELRTWLERYDEQL 270 C L +DTM N+SS+AYGAYFERLY++Q +MYQGGRGP+GY++SELR+WL++Y +L Sbjct: 102534 CPLAVDTMDNASSAAYGAYFERLYIVQEERVMYQGGRGPEGYKISELRSWLDQYKTRL 102707 >KN327708.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic scaffold scaffold4627, whole genome shotgun sequence Length = 83914 Score = 143 bits (361), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 77/189 (40%), Positives = 111/189 (58%), Gaps = 22/189 (11%) Frame = +3 Query: 99 FFKQAHEGGPAPNSEVV-LPDGFQSQ---------------HILDYAQGNRPLVLNFGSC 142 F Q GG APNS V+ + +G H+LD+A RPLV+NFGS Sbjct: 32649 FCHQVKLGGEAPNSRVIHITNGVSGGSTRCKSVGGKLGSKCHLLDFANSERPLVVNFGSA 32828 Query: 143 TUPPFMARMSAFQRLVTKYQRDVDFLIIYIEEAHPSDGWVT---TDSPYIIPQHRSLEDR 199 T PPF +++SAF +LV ++ DFL++YI+EAHPSDGW + S + + +H++ EDR Sbjct: 32829 T*PPFTSQLSAFSKLVEEFSGVADFLLVYIDEAHPSDGWAAPGISPSSFEVKKHKNQEDR 33008 Query: 200 VSAARVLQQG---APGCALVLDTMANSSSSAYGAYFERLYVIQSGTIMYQGGRGPDGYQV 256 +AA L Q P C +V D M N+++ AYG FER+ ++Q I Y GG+GP Y + Sbjct: 33009 CAAAHQLLQRFSLPPQCQVVADCMDNNANVAYGVSFERVCIVQRQKIAYLGGKGPFFYSL 33188 Query: 257 SELRTWLER 265 E++ WLE+ Sbjct: 33189 QEVQLWLEQ 33215 >KN323949.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic scaffold scaffold734, whole genome shotgun sequence Length = 504704 Score = 64.7 bits (156), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 32/61 (52%), Positives = 39/61 (63%), Gaps = 1/61 (1%) Frame = +1 Query: 119 GFQSQHI-LDYAQGNRPLVLNFGSCTUPPFMARMSAFQRLVTKYQRDVDFLIIYIEEAHP 177 GF+ I L GNRPLVLNFGSCT P F+ + F +LV + DFL+IYIEEAH Sbjct: 423271 GFKCLTISLMCVLGNRPLVLNFGSCT*PSFLLKFDEFNKLVEDFNPIADFLLIYIEEAHA 423450 Query: 178 S 178 + Sbjct: 423451 T 423453 Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 30/68 (44%), Positives = 45/68 (66%) Frame = +3 Query: 179 DGWVTTDSPYIIPQHRSLEDRVSAARVLQQGAPGCALVLDTMANSSSSAYGAYFERLYVI 238 DGW ++ +I H++LEDR AA+ L + P C +V+DTM N SSS Y A ERLY++ Sbjct: 424938 DGWAFKNN-IVIKNHQNLEDRKMAAQFLLKKNPLCPVVVDTMENLSSSKYAALPERLYLL 425114 Query: 239 QSGTIMYQ 246 + G ++Y+ Sbjct: 425115 REGKVVYK 425138 >KN345791.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic scaffold scaffold24044, whole genome shotgun sequence Length = 91489 Score = 34.3 bits (77), Expect = 5.9, Method: Compositional matrix adjust. Identities = 20/69 (28%), Positives = 33/69 (47%) Frame = +1 Query: 100 FKQAHEGGPAPNSEVVLPDGFQSQHILDYAQGNRPLVLNFGSCTUPPFMARMSAFQRLVT 159 FK E GP +V+P G + + DYAQ ++LN+ + PPF + ++ Sbjct: 19741 FKSQAEEGP-----LVIPQGIMHRKMQDYAQNPLKIMLNYFFSSPPPFCFCLFVCLQINN 19905 Query: 160 KYQRDVDFL 168 KY+ + F Sbjct: 19906 KYKTILTFF 19932 Database: genome.fa Posted date: Sep 15, 2015 12:21 AM Number of letters in database: 2,188,353,730 Number of sequences in database: 47,351 Lambda K H 0.323 0.139 0.440 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 47351 Number of Hits to DB: 912,369,158 Number of extensions: 18088536 Number of successful extensions: 62674 Number of sequences better than 10.0: 5 Number of HSP's gapped: 62661 Number of HSP's successfully gapped: 6 Length of query: 278 Length of database: 729,451,243 Length adjustment: 128 Effective length of query: 150 Effective length of database: 723,390,315 Effective search space: 108508547250 Effective search space used: 108508547250 Neighboring words threshold: 13 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 50 (23.9 bits)