TBLASTN 2.2.26 [Sep-21-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= SPP00000026_2.0 # Protein # Glutathione peroxidase 4 (GPx4) # Human (Homo sapiens) (197 letters) Database: genome.fa 47,351 sequences; 2,188,353,730 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value KN338580.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic... 209 4e-61 KN330210.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic... 122 2e-30 KN350882.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic... 87 4e-18 KN325713.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic... 80 1e-15 KN343115.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic... 67 3e-11 KN332733.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic... 66 8e-11 KN325303.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic... 64 3e-10 KN325192.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic... 43 0.005 KN324818.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic... 33 5.0 >KN338580.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic scaffold scaffold16095, whole genome shotgun sequence Length = 178707 Score = 209 bits (533), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 101/142 (71%), Positives = 119/142 (83%) Frame = +2 Query: 39 RSMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQUGKTEVNYTQLVDLHARYAECGLRIL 98 +S++ F AKDIDG+ V+L+KY+ VCI+TNVAS+ GK +VNYTQ VD++ARYAE GL IL Sbjct: 178277 KSIYYFHAKDIDGNEVSLEKYQRHVCIITNVASK*GKMDVNYTQFVDMYARYAERGLCIL 178456 Query: 99 AFPCNQFGKQEPGSNEEIKEFAAGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILG 158 AFPCNQFGKQEPG N +IK FA Y VKFD+FSKI VNGD+A PLWKW+K QPKG+G LG Sbjct: 178457 AFPCNQFGKQEPGDNAQIKAFAERYGVKFDVFSKIDVNGDEALPLWKWLKDQPKGRGTLG 178636 Query: 159 NAIKWNFTKFLIDKNGCVVKRY 180 NAIKWNF KFLID+ G VVKRY Sbjct: 178637 NAIKWNFRKFLIDQQGQVVKRY 178702 >KN330210.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic scaffold scaffold7192, whole genome shotgun sequence Length = 293575 Score = 122 bits (306), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 78/184 (42%), Positives = 105/184 (57%), Gaps = 13/184 (7%) Frame = +3 Query: 27 TMCASRDDWRC-ARSMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQUGKTEVNYTQLVD 85 +MCA D ++C A+S++E AKD DG V+L+KYRG+ CI+T+VAS+ KT++NYTQLVD Sbjct: 44571 SMCAQLD-YKCSAKSIYESHAKDFDGSHVSLEKYRGYACIITSVASK*DKTDINYTQLVD 44747 Query: 86 LHARYAECGLRILAFPCNQFGKQEPGSNEEIKEFAAGYNVKFDMFSKICVNGDDAHPLWK 145 ++A E LRILAFPCNQF KQ PG+N +IK F A Y VK D+ +I +D K Sbjct: 44748 MYAT*TERCLRILAFPCNQFKKQ*PGNNAQIKAFVANYGVKVDIHIQI----ED*R--LK 44909 Query: 146 WMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVKRYGP------------MEEPLVIEKDL 193 M P + ++GC R P M++P VI+KDL Sbjct: 44910 SMGTTP-----------------CLCRSGC---RSSPKAEAPRKSNKMTMKDPYVIKKDL 45029 Query: 194 PHYF 197 P Y Sbjct: 45030 PTYL 45041 >KN350882.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic scaffold scaffold29685, whole genome shotgun sequence Length = 211812 Score = 87.0 bits (214), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 42/58 (72%), Positives = 49/58 (84%) Frame = -2 Query: 55 NLDKYRGFVCIVTNVASQUGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQEPGS 112 +L RG VCI+TNVAS+ GKT+VNYTQ VD++ARYAE GLRILAFPCNQFGKQ G+ Sbjct: 120869 SLPLLRGHVCIITNVASK*GKTDVNYTQFVDMYARYAERGLRILAFPCNQFGKQVGGA 120696 Score = 85.5 bits (210), Expect = 1e-17, Method: Composition-based stats. Identities = 38/51 (74%), Positives = 41/51 (80%) Frame = -1 Query: 108 QEPGSNEEIKEFAAGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILG 158 QEPG N +IK FA Y VKFDMFSKI VNGDDA PLWKW+K QPKG+G LG Sbjct: 120123 QEPGDNAQIKAFAERYGVKFDMFSKIDVNGDDALPLWKWLKDQPKGRGTLG 119971 Score = 42.7 bits (99), Expect = 0.006, Method: Composition-based stats. Identities = 20/33 (60%), Positives = 26/33 (78%), Gaps = 1/33 (3%) Frame = -1 Query: 29 CASRD-DWRCARSMHEFSAKDIDGHMVNLDKYR 60 CA D DWR A+S++ F AKDIDG+ V+L+KYR Sbjct: 121344 CAQVDEDWRSAKSIYYFHAKDIDGNEVSLEKYR 121246 Score = 36.2 bits (82), Expect = 0.65, Method: Composition-based stats. Identities = 14/22 (63%), Positives = 19/22 (86%) Frame = -1 Query: 167 KFLIDKNGCVVKRYGPMEEPLV 188 +FLID+ G VVKRY PM++P+V Sbjct: 119409 QFLIDQQGQVVKRYSPMDDPIV 119344 >KN325713.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic scaffold scaffold2594, whole genome shotgun sequence Length = 144888 Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 38/84 (45%), Positives = 54/84 (64%), Gaps = 1/84 (1%) Frame = +1 Query: 65 IVTNVASQUGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQEPGSNEEIKEFAAG-Y 123 +V NVAS T+ NY +L +LH + +LAFPCNQFG+ EP S++EI+ FA G Y Sbjct: 106585 LVVNVASYCQHTDKNYIELQELHREFGPSHFTVLAFPCNQFGESEPSSSQEIESFAKGNY 106764 Query: 124 NVKFDMFSKICVNGDDAHPLWKWM 147 V F +F KI + G +A P +K++ Sbjct: 106765 GVTFPIFYKIKILGSEAEPAFKFL 106836 >KN343115.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic scaffold scaffold21068, whole genome shotgun sequence Length = 77018 Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 34/79 (43%), Positives = 48/79 (60%), Gaps = 1/79 (1%) Frame = +2 Query: 70 ASQUGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQEPGSNEEIKEFA-AGYNVKFD 128 AS+ G T+ +Y L L +LAFPCNQFG+QEP SN+EI+ FA Y F Sbjct: 5396 ASECGYTDSHYKALQQLQRDLGPYHFNVLAFPCNQFGQQEPDSNKEIENFARKTYGATFP 5575 Query: 129 MFSKICVNGDDAHPLWKWM 147 +FSK V+G A+ ++K++ Sbjct: 5576 LFSKTAVSGAGANAVFKYL 5632 >KN332733.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic scaffold scaffold9928, whole genome shotgun sequence Length = 64086 Score = 65.9 bits (159), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 35/84 (41%), Positives = 48/84 (57%) Frame = +1 Query: 38 ARSMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQUGKTEVNYTQLVDLHARYAECGLRI 97 A+S ++ SA + G V+ + +RG V ++ NVAS G T +YTQL L ARY L + Sbjct: 34993 AKSFYDLSAITLQGEKVDFNNFRGRVVLIENVASL*GTTVRDYTQLNQLQARYPR-RLVV 35169 Query: 98 LAFPCNQFGKQEPGSNEEIKEFAA 121 L FPCNQFG Q G + F + Sbjct: 35170 LGFPCNQFGYQVSGPSAVPSPFPS 35241 Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust. Identities = 30/109 (27%), Positives = 43/109 (39%), Gaps = 23/109 (21%) Frame = +1 Query: 108 QEPGSNEEIKEF------AAGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKG-------- 153 QE +NEEI G+ F +F K VNG D HP++ ++K Sbjct: 37009 QENCTNEEILNSLKYVRPGGGFEPNFTLFQKCQVNGQDTHPVFAYLKAHLPAPVDNPAAL 37188 Query: 154 ---------KGILGNAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEKDL 193 + + WNF KFL+ G KRY P + +E D+ Sbjct: 37189 MTDPRFLVWSPVQRADVTWNFEKFLVGPEGEPFKRYSPKFQTSHVEPDI 37335 >KN325303.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic scaffold scaffold2189, whole genome shotgun sequence Length = 63301 Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 33/84 (39%), Positives = 43/84 (51%), Gaps = 1/84 (1%) Frame = -1 Query: 37 CARSMHEFSAKDIDG-HMVNLDKYRGFVCIVTNVASQUGKTEVNYTQLVDLHARYAECGL 95 R + A+ + G + LD G V +V+NVAS G T ++ QL +L RY GL Sbjct: 30325 AGRGLAGMQARPLGGGEPLALDSLLGRVLLVSNVASL*GTTARDFVQLNELQERYGPRGL 30146 Query: 96 RILAFPCNQFGKQEPGSNEEIKEF 119 +L FPCNQFG Q PG E Sbjct: 30145 VVLGFPCNQFGHQVPGGAGPAHEL 30074 Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 33/89 (37%), Positives = 43/89 (48%), Gaps = 17/89 (19%) Frame = -1 Query: 122 GYNVKFDMFSKICVNGDDAHPLWKWMK--------------IQPKG---KGILGNAIKWN 164 GY F MF K VNGD+AHPL+K++K P+ + N I WN Sbjct: 24814 GYEPNFTMFEKCDVNGDNAHPLFKFLKEALPFPHDDPVALMTNPQYIIWSPVCRNDISWN 24635 Query: 165 FTKFLIDKNGCVVKRYGPMEEPLVIEKDL 193 F KFLI +G KRY E + I+ D+ Sbjct: 24634 FEKFLIGPDGIPFKRYSRRFETIKIQDDI 24548 >KN325192.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic scaffold scaffold2042, whole genome shotgun sequence Length = 57782 Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust. Identities = 19/36 (52%), Positives = 22/36 (61%) Frame = +2 Query: 81 TQLVDLHARYAECGLRILAFPCNQFGKQEPGSNEEI 116 +L L + GL +L FP NQFGKQEPG N EI Sbjct: 38303 AELNALQSELGPYGLVVLGFPSNQFGKQEPGQNAEI 38410 >KN324818.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic scaffold scaffold1671, whole genome shotgun sequence Length = 283610 Score = 33.5 bits (75), Expect = 5.0, Method: Compositional matrix adjust. Identities = 25/84 (29%), Positives = 35/84 (41%) Frame = -2 Query: 53 MVNLDKYRGFVCIVTNVASQUGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQEPGS 112 MV D CIV N+A+Q + + +++ H Y IL P +Q Q S Sbjct: 202717 MVEKDHDYPHTCIVPNIANQINRASIYFSKASSTHYSYCIIN*LILQLPADQLYVQ--SS 202544 Query: 113 NEEIKEFAAGYNVKFDMFSKICVN 136 IK G N SK+C+N Sbjct: 202543 QHVIK----GSNKL*SQISKMCIN 202484 Database: genome.fa Posted date: Sep 15, 2015 12:21 AM Number of letters in database: 2,188,353,730 Number of sequences in database: 47,351 Lambda K H 0.325 0.140 0.459 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 47351 Number of Hits to DB: 567,757,390 Number of extensions: 8407534 Number of successful extensions: 37663 Number of sequences better than 10.0: 9 Number of HSP's gapped: 37659 Number of HSP's successfully gapped: 14 Length of query: 197 Length of database: 729,451,243 Length adjustment: 123 Effective length of query: 74 Effective length of database: 723,627,070 Effective search space: 53548403180 Effective search space used: 53548403180 Neighboring words threshold: 13 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 49 (23.5 bits)