TBLASTN 2.2.26 [Sep-21-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= SPP00000081_2.0 # Protein # Selenoprotein O (SelO) # Human (Homo sapiens) (669 letters) Database: genome.fa 47,351 sequences; 2,188,353,730 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value KN356301.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic... 135 1e-30 KN323317.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic... 129 1e-28 KN337050.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic... 69 7e-10 >KN356301.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic scaffold scaffold36668, whole genome shotgun sequence Length = 21252 Score = 135 bits (339), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 61/69 (88%), Positives = 67/69 (97%) Frame = -2 Query: 185 RQADGRKVLRSSIREFLCSEAMFHLGVPTTRAGACVTSESTVVRDVFYDGNPKYEQCTVV 244 RQADGRKVLRSSIREFLCSEAMFHLG+PTTRAG CVTS+S V+RDVFYDGNPK+E+CTVV Sbjct: 1898 RQADGRKVLRSSIREFLCSEAMFHLGIPTTRAGTCVTSDSKVIRDVFYDGNPKHERCTVV 1719 Query: 245 LRVASTFIR 253 LR+ASTFIR Sbjct: 1718 LRIASTFIR 1692 Score = 109 bits (273), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 53/64 (82%), Positives = 54/64 (84%) Frame = -3 Query: 122 LFFSGNALLPGAEPAAHCYCGHQFGQFAGQLGDGAAMYLGEVCTATGERWELQLKGAGPT 181 L FSGN L PGAEPAAHCYCGHQFG FAGQLGDGAAMYLGEV G RWE+QLKGAG T Sbjct: 7129 LCFSGNCLPPGAEPAAHCYCGHQFGSFAGQLGDGAAMYLGEVLGPAGRRWEVQLKGAGLT 6950 Query: 182 PFSR 185 PFSR Sbjct: 6949 PFSR 6938 Score = 109 bits (273), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 49/67 (73%), Positives = 57/67 (85%) Frame = -1 Query: 253 RFGSFEIFKSADEHTGRAGPSVGRNDIRVQLLDYVISSFYPEIQAAHASDSVQRNAAFFR 312 RFGSFEIFK DEHTGR GPSV RNDIR+Q+L+YVIS+FYPEIQ A+ +++QRNAAFFR Sbjct: 744 RFGSFEIFKPMDEHTGRKGPSVNRNDIRIQMLNYVISTFYPEIQQAYPDNTIQRNAAFFR 565 Query: 313 EVTRRTA 319 EV R T Sbjct: 564 EVGRLTV 544 >KN323317.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic scaffold scaffold123, whole genome shotgun sequence Length = 200082 Score = 129 bits (323), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 61/98 (62%), Positives = 75/98 (76%) Frame = -3 Query: 354 FLDRYDPDHVCNASDNTGRYAYSKQPEVCRWNLRKXXXXXXXXXXXXXXXXILAEEFDAE 413 F+ RYDP+H+CN SDNTGRYAY+KQPE+C+WNL K IL EE++ E Sbjct: 195433 FVCRYDPEHICNGSDNTGRYAYNKQPEICKWNLGKLAEALVPELPLEISELILEEEYNVE 195254 Query: 414 FQRHYLQKMRRKLGLVQVELEEDGALVSKLLETMHLTG 451 F++HYLQKMR+KLGL+Q+ELEED LVS+LLETMHLTG Sbjct: 195253 FEKHYLQKMRKKLGLIQLELEEDNKLVSELLETMHLTG 195140 Score = 98.2 bits (243), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 45/63 (71%), Positives = 54/63 (85%) Frame = -2 Query: 501 RQLSMMLMLAQSNPQLFALMGTRAGIARELERVEQQSRLEQLSAAELQSRNQGHWADWLQ 560 RQLSMMLMLAQSNPQLFAL+GT+A I ELER+EQ S+L+QL+AA+L SRN HW +WL+ Sbjct: 192491 RQLSMMLMLAQSNPQLFALIGTKANINEELERIEQYSKLQQLTAADLLSRNNRHWTEWLE 192312 Query: 561 AYR 563 YR Sbjct: 192311 KYR 192303 Score = 97.4 bits (241), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 43/61 (70%), Positives = 52/61 (85%), Gaps = 2/61 (3%) Frame = -2 Query: 311 FREVTRRTARMVAEWQCVGFCHGVLNTDNMSILGLTIDYGPFGFLDR--YDPDHVCNASD 368 F ++T+RTAR+VAEWQCVGFCHGVLNTDNMSI+GLTIDYGPFGF+DR + D C+A Sbjct: 196319 FFQITKRTARLVAEWQCVGFCHGVLNTDNMSIVGLTIDYGPFGFMDRSVWHNDLKCSAKS 196140 Query: 369 N 369 + Sbjct: 196139 D 196137 Score = 86.3 bits (212), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 38/59 (64%), Positives = 48/59 (81%) Frame = -1 Query: 559 LQAYRARLDKDLEGAGDAAAWQAEHVRVMHANNPKYVLRNYIAQNAIEAAERGDFSEVR 617 L +RARL+K++E W AEHV+VM++NNPKY+LRNYIAQNAIEAAE GDF+EV+ Sbjct: 189930 LFNFRARLEKEIENVSAIDTWNAEHVKVMNSNNPKYILRNYIAQNAIEAAENGDFTEVQ 189754 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 35/74 (47%), Positives = 47/74 (63%) Frame = -2 Query: 448 HLTGADFTNTFYLLSSFPVELESPGLAEFLARLMEQCASLEELRLAFRPQMDPRQLSMML 507 + G DFTN F LLSSF V+++ EFL ++ QCAS+EEL++AF+PQMDPR Sbjct: 194924 FVLGGDFTNIFRLLSSFSVDVDFLKFEEFLEKITNQCASMEELKVAFKPQMDPR------ 194763 Query: 508 MLAQSNPQLFALMG 521 + N Q F L+G Sbjct: 194762 --YKLNKQSFFLLG 194727 >KN337050.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic scaffold scaffold14501, whole genome shotgun sequence Length = 123819 Score = 68.6 bits (166), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 38/82 (46%), Positives = 43/82 (52%), Gaps = 33/82 (40%) Frame = -2 Query: 168 GERWELQLKGAGPTPFSR---------------------------------QADGRKVLR 194 GERWELQLKG+G TP+SR DGR VLR Sbjct: 71786 GERWELQLKGSGKTPYSRYSIFKSIHTEV*FFFSLNFRNKTNVAYLFVLCRDGDGRAVLR 71607 Query: 195 SSIREFLCSEAMFHLGVPTTRA 216 SS+REFLCSEAM LG+PT+RA Sbjct: 71606 SSVREFLCSEAMHCLGIPTSRA 71541 Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 29/77 (37%), Positives = 39/77 (50%), Gaps = 2/77 (2%) Frame = -2 Query: 286 YVISSFYPEIQAAHA--SDSVQRNAAFFREVTRRTARMVAEWQCVGFCHGVLNTDNMSIL 343 Y S Y ++ H S R + E + + + CV GV NTDN S+L Sbjct: 55583 YGYKSTYCDLDPVHLPFSKFSNRILIYCPETKKLHCFDICFYCCVIL--GVCNTDNFSLL 55410 Query: 344 GLTIDYGPFGFLDRYDP 360 +TIDYGPFGF++ YDP Sbjct: 55409 SITIDYGPFGFMESYDP 55359 Score = 39.3 bits (90), Expect = 0.65, Method: Compositional matrix adjust. Identities = 16/27 (59%), Positives = 23/27 (85%) Frame = -3 Query: 591 NPKYVLRNYIAQNAIEAAERGDFSEVR 617 NP+YVLRN++A++AI+ AE DFS V+ Sbjct: 32230 NPRYVLRNWMAESAIQKAEMNDFSGVK 32150 Database: genome.fa Posted date: Sep 15, 2015 12:21 AM Number of letters in database: 2,188,353,730 Number of sequences in database: 47,351 Lambda K H 0.322 0.135 0.412 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 47351 Number of Hits to DB: 1,621,041,957 Number of extensions: 23970597 Number of successful extensions: 115705 Number of sequences better than 10.0: 5 Number of HSP's gapped: 115689 Number of HSP's successfully gapped: 15 Length of query: 669 Length of database: 729,451,243 Length adjustment: 137 Effective length of query: 532 Effective length of database: 722,964,156 Effective search space: 384616930992 Effective search space used: 384616930992 Neighboring words threshold: 13 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 54 (25.4 bits)