TBLASTN 2.2.26 [Sep-21-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= SPP00000017_2.0 # Protein # Glutathione peroxidase 1 (GPx1) # Human (Homo sapiens) (203 letters) Database: genome.fa 47,351 sequences; 2,188,353,730 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value KN325303.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic... 191 2e-54 KN332733.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic... 174 2e-48 KN325192.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic... 75 1e-23 KN338580.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic... 89 1e-18 KN325713.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic... 68 2e-11 KN343115.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic... 65 1e-10 KN350882.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic... 55 4e-07 KN330210.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic... 48 1e-04 KN326275.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic... 34 4.5 >KN325303.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic scaffold scaffold2189, whole genome shotgun sequence Length = 63301 Score = 191 bits (486), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 99/188 (52%), Positives = 121/188 (64%), Gaps = 4/188 (2%) Frame = -1 Query: 20 SARPLAGGEPVSLGSLRGKVLLIENVAS---LUGTTVRDYTQMNELQRRLGPRGLVVLGF 76 + PL E + K LLI+ +A L G V+ + + L +L Sbjct: 25078 AVNPLLLLEALFKNVFSYKYLLIQLMAD*MLLVGVNVQREKHFSIFIFVIEILSLFILIL 24899 Query: 77 PCNQFGHQ-ENAKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREALPA 135 F ENA N+EIL SLKYVRPG G+EPNF +FEKC+VNG AHPLF FL+EALP Sbjct: 24898 DHTAFFFS*ENATNDEILLSLKYVRPGNGYEPNFTMFEKCDVNGDNAHPLFKFLKEALPF 24719 Query: 136 PSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQTIDIEPDIEAL 195 P DD ALMT+P+ I WSPVCRND++WNFEKFL+GPDG+P +RYSRRF+TI I+ DIE L Sbjct: 24718 PHDDPVALMTNPQYIIWSPVCRNDISWNFEKFLIGPDGIPFKRYSRRFETIKIQDDIEKL 24539 Query: 196 LSQGPSCA 203 L Q PS A Sbjct: 24538 LQQIPSNA 24515 Score = 103 bits (256), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 49/71 (69%), Positives = 57/71 (80%) Frame = -1 Query: 14 QSVYAFSARPLAGGEPVSLGSLRGKVLLIENVASLUGTTVRDYTQMNELQRRLGPRGLVV 73 + + ARPL GGEP++L SL G+VLL+ NVASL GTT RD+ Q+NELQ R GPRGLVV Sbjct: 30319 RGLAGMQARPLGGGEPLALDSLLGRVLLVSNVASL*GTTARDFVQLNELQERYGPRGLVV 30140 Query: 74 LGFPCNQFGHQ 84 LGFPCNQFGHQ Sbjct: 30139 LGFPCNQFGHQ 30107 >KN332733.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic scaffold scaffold9928, whole genome shotgun sequence Length = 64086 Score = 174 bits (441), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 78/114 (68%), Positives = 91/114 (79%) Frame = +1 Query: 84 QENAKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREALPAPSDDATAL 143 QEN NEEILNSLKYVRPGGGFEPNF LF+KC+VNG HP+FA+L+ LPAP D+ AL Sbjct: 37009 QENCTNEEILNSLKYVRPGGGFEPNFTLFQKCQVNGQDTHPVFAYLKAHLPAPVDNPAAL 37188 Query: 144 MTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQTIDIEPDIEALLS 197 MTDP+ + WSPV R DV WNFEKFLVGP+G P +RYS +FQT +EPDI+ LL Sbjct: 37189 MTDPRFLVWSPVQRADVTWNFEKFLVGPEGEPFKRYSPKFQTSHVEPDIQRLLK 37350 Score = 87.8 bits (216), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 47/71 (66%), Positives = 54/71 (76%) Frame = +1 Query: 14 QSVYAFSARPLAGGEPVSLGSLRGKVLLIENVASLUGTTVRDYTQMNELQRRLGPRGLVV 73 +S Y SA L G E V + RG+V+LIENVASL GTTVRDYTQ+N+LQ R PR LVV Sbjct: 34996 KSFYDLSAITLQG-EKVDFNNFRGRVVLIENVASL*GTTVRDYTQLNQLQARY-PRRLVV 35169 Query: 74 LGFPCNQFGHQ 84 LGFPCNQFG+Q Sbjct: 35170 LGFPCNQFGYQ 35202 >KN325192.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic scaffold scaffold2042, whole genome shotgun sequence Length = 57782 Score = 74.7 bits (182), Expect(2) = 1e-23, Method: Compositional matrix adjust. Identities = 45/113 (39%), Positives = 54/113 (47%), Gaps = 39/113 (34%) Frame = +2 Query: 57 TQMNELQRRLGPRGLVVLGFPCNQFGHQENAKNEEILNSLK------------------- 97 ++N LQ LGP GLVVLGFP NQFG QE +N EIL +LK Sbjct: 38303 AELNALQSELGPYGLVVLGFPSNQFGKQEPGQNAEILPALK*VPEPGLGWGLPSTGSAPT 38482 Query: 98 --------------------YVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLR 130 YVRPGGGF PNF LF+K +VNG ++ FL+ Sbjct: 38483 CVGRGWKGARRPILPFHFFRYVRPGGGFVPNFQLFQKGDVNGEREQKVYTFLK 38641 Score = 58.2 bits (139), Expect(2) = 1e-23, Method: Compositional matrix adjust. Identities = 27/56 (48%), Positives = 37/56 (66%), Gaps = 1/56 (1%) Frame = +3 Query: 146 DPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQTIDIEPDI-EALLSQGP 200 DPK + W P+ +D+ WNFEKFLVGPDGVP+ R+ R ++ DI E + +Q P Sbjct: 38757 DPKQLFWQPLKIHDIKWNFEKFLVGPDGVPVMRWYHRATMATVKNDIVEYMKAQRP 38924 >KN338580.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic scaffold scaffold16095, whole genome shotgun sequence Length = 178707 Score = 88.6 bits (218), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 60/167 (35%), Positives = 83/167 (49%) Frame = +2 Query: 14 QSVYAFSARPLAGGEPVSLGSLRGKVLLIENVASLUGTTVRDYTQMNELQRRLGPRGLVV 73 +S+Y F A+ + G E VSL + V +I NVAS G +YTQ ++ R RGL + Sbjct: 178277 KSIYYFHAKDIDGNE-VSLEKYQRHVCIITNVASK*GKMDVNYTQFVDMYARYAERGLCI 178453 Query: 74 LGFPCNQFGHQENAKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREAL 133 L FPCNQFG QE N +I + R G F+ +F K +VNG A PL+ +L++ Sbjct: 178454 LAFPCNQFGKQEPGDNAQIKAFAE--RYGVKFD----VFSKIDVNGDEALPLWKWLKD-- 178609 Query: 134 PAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYS 180 P T N + WNF KFL+ G ++RYS Sbjct: 178610 -QPKGRGT--------------LGNAIKWNFRKFLIDQQGQVVKRYS 178705 >KN325713.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic scaffold scaffold2594, whole genome shotgun sequence Length = 144888 Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 37/96 (38%), Positives = 52/96 (54%) Frame = +1 Query: 34 SLRGKVLLIENVASLUGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQENAKNEEIL 93 S+ K L+ NVAS T ++Y ++ EL R GP VL FPCNQFG E + ++EI Sbjct: 106564 SISLKASLVVNVASYCQHTDKNYIELQELHREFGPSHFTVLAFPCNQFGESEPSSSQEIE 106743 Query: 94 NSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFL 129 + K G + F +F K ++ G+ A P F FL Sbjct: 106744 SFAK-----GNYGVTFPIFYKIKILGSEAEPAFKFL 106836 >KN343115.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic scaffold scaffold21068, whole genome shotgun sequence Length = 77018 Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 39/84 (46%), Positives = 47/84 (55%) Frame = +2 Query: 46 ASLUGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQENAKNEEILNSLKYVRPGGGF 105 AS G T Y + +LQR LGP VL FPCNQFG QE N+EI N + R G Sbjct: 5396 ASECGYTDSHYKALQQLQRDLGPYHFNVLAFPCNQFGQQEPDSNKEIEN---FARKTYG- 5563 Query: 106 EPNFMLFEKCEVNGAGAHPLFAFL 129 F LF K V+GAGA+ +F +L Sbjct: 5564 -ATFPLFSKTAVSGAGANAVFKYL 5632 >KN350882.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic scaffold scaffold29685, whole genome shotgun sequence Length = 211812 Score = 55.1 bits (131), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 29/54 (53%), Positives = 34/54 (62%) Frame = -2 Query: 31 SLGSLRGKVLLIENVASLUGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQ 84 SL LRG V +I NVAS G T +YTQ ++ R RGL +L FPCNQFG Q Sbjct: 120869 SLPLLRGHVCIITNVASK*GKTDVNYTQFVDMYARYAERGLRILAFPCNQFGKQ 120708 >KN330210.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic scaffold scaffold7192, whole genome shotgun sequence Length = 293575 Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/79 (36%), Positives = 40/79 (50%) Frame = +3 Query: 14 QSVYAFSARPLAGGEPVSLGSLRGKVLLIENVASLUGTTVRDYTQMNELQRRLGPRGLVV 73 +S+Y A+ G VSL RG +I +VAS T +YTQ+ ++ R L + Sbjct: 44607 KSIYESHAKDFDGSH-VSLEKYRGYACIITSVASK*DKTDINYTQLVDMYAT*TERCLRI 44783 Query: 74 LGFPCNQFGHQENAKNEEI 92 L FPCNQF Q N +I Sbjct: 44784 LAFPCNQFKKQ*PGNNAQI 44840 >KN326275.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic scaffold scaffold3202, whole genome shotgun sequence Length = 81585 Score = 33.9 bits (76), Expect = 4.5, Method: Compositional matrix adjust. Identities = 15/36 (41%), Positives = 23/36 (63%) Frame = -3 Query: 121 GAHPLFAFLREALPAPSDDATALMTDPKLITWSPVC 156 G+H AFLR+A P P+ + A + D L +W+P+C Sbjct: 46546 GSHLCVAFLRDA-PHPAQTSKAFLADQCLTSWTPLC 46442 Database: genome.fa Posted date: Sep 15, 2015 12:21 AM Number of letters in database: 2,188,353,730 Number of sequences in database: 47,351 Lambda K H 0.322 0.139 0.431 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 47351 Number of Hits to DB: 528,169,918 Number of extensions: 8648112 Number of successful extensions: 30463 Number of sequences better than 10.0: 10 Number of HSP's gapped: 30459 Number of HSP's successfully gapped: 14 Length of query: 203 Length of database: 729,451,243 Length adjustment: 123 Effective length of query: 80 Effective length of database: 723,627,070 Effective search space: 57890165600 Effective search space used: 57890165600 Neighboring words threshold: 13 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 49 (23.5 bits)