TBLASTN 2.2.26 [Sep-21-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= SPP00001062_2.0 # Protein # Thioredoxin reductase 2 (TR2) # Chicken (Gallus gallus) (518 letters) Database: genome.fa 47,351 sequences; 2,188,353,730 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value KN347796.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic... 112 5e-24 KN346354.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic... 110 2e-23 KN333725.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic... 98 2e-19 KN323524.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic... 52 7e-05 KN328625.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic... 45 0.008 KN329011.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic... 36 3.5 >KN347796.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic scaffold scaffold26330, whole genome shotgun sequence Length = 165110 Score = 112 bits (280), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 70/157 (44%), Positives = 85/157 (54%), Gaps = 41/157 (26%) Frame = +3 Query: 162 KGGKETTLTAEKIVIATGGRPKYPTHITGALEYGIT------------------------ 197 + G+ET TAE+ V+ATG RP+Y I G EY IT Sbjct: 82806 RKGQETYHTAERFVLATGERPRY-LGIPGDKEYCITR*DEKILTEIVFCCCKCIQKN*VK 82982 Query: 198 -----------------SDDLFWLKDSPGKTLVVGASYVSLECAGFLTGIGLDTTVIMRI 240 SDDLF L PGKTLVVGASYV+LECAGFL GIGLD +V Sbjct: 82983 LNCITTFQCVQPYSFLFSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVSV---- 83150 Query: 241 IMRSIPLRGFDQQMASLVTEHMESYGTKFLKKCVPAK 277 ++RSI LRGFDQ+MA HME++G KF++K VP + Sbjct: 83151 MVRSILLRGFDQEMAERAGAHMETHGVKFIRKFVPIQ 83261 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 30/35 (85%), Positives = 33/35 (94%) Frame = +1 Query: 71 GLGGTCVNVGCIPKKLMHQAALLGGALKDAQHYGW 105 GLGGTCVNVGCIPKKLMHQAALLG ALKD++ +GW Sbjct: 77545 GLGGTCVNVGCIPKKLMHQAALLGQALKDSRKFGW 77649 Score = 65.1 bits (157), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 31/51 (60%), Positives = 38/51 (74%) Frame = +3 Query: 331 ETGKIIVDASEATSVPHIYAIGDITEGRPELTPTAIAAGKLLARRLFGHSS 381 GKI V E T+VP++YAIGDI +G+ ELTP AI AG+LLARRL+ SS Sbjct: 85794 RNGKIPVSDEEQTNVPYVYAIGDILDGKLELTPVAIQAGRLLARRLYAGSS 85946 Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 27/46 (58%), Positives = 34/46 (73%) Frame = +3 Query: 451 EQRILGLHFIGPNAGEVIQGFALGIKCGATYPQLMKTIGIHPTCAE 496 + R++G H +GP+AGE+ QGFA IKCG T L +TIGIHPT AE Sbjct: 88938 KNRVIGFHVLGPSAGEITQGFAAAIKCGLTKELLNETIGIHPTSAE 89075 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 26/55 (47%), Positives = 35/55 (63%) Frame = +3 Query: 103 YGWSVAHPVHHNWSVMAQAVQNYVKSLNWGHRVQLQDKKVKYFNMKGSFSDSHTV 157 Y + V+ V HNW M +A+QNY+ SLNWG+RV L++K V Y N F + H V Sbjct: 79497 YSFLVSVSVKHNWETMVEAIQNYIGSLNWGYRVSLREKTVTYLNAYAEFIEPHKV 79661 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 31/55 (56%), Positives = 38/55 (69%) Frame = +1 Query: 366 IAAGKLLARRLFGHSSELMDYDNVPTTVFTPLEYGCVGLSEEKAVQCYGSDNVEV 420 +++ +L + HSS DY NVPTTVFTPLEYG GL EEKAV+ YG N+EV Sbjct: 86164 LSSS*VLDMHI*FHSSFQCDYVNVPTTVFTPLEYGSCGLPEEKAVKEYGEHNLEV 86328 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 21/42 (50%), Positives = 26/42 (61%), Gaps = 1/42 (2%) Frame = +1 Query: 46 KEAAQFGKNVAVLDYVEPSPRGTKWGLGG-TCVNVGCIPKKL 86 +EAA GK V VLDYV P+P GT WG C+ + C+ K L Sbjct: 76309 QEAATLGKKVMVLDYVVPTPLGTSWGKAQIICLELECM*KDL 76434 Score = 38.5 bits (88), Expect = 0.89, Method: Compositional matrix adjust. Identities = 20/41 (48%), Positives = 26/41 (63%), Gaps = 7/41 (17%) Frame = +1 Query: 29 EYDLLVIGGGSGGLACAKEAAQFG-------KNVAVLDYVE 62 +YDL+VIGGGSGGLAC+K +F K+ A LD + Sbjct: 74920 DYDLIVIGGGSGGLACSKVRHKFAL*PALQIKSSATLDVIS 75042 >KN346354.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic scaffold scaffold24631, whole genome shotgun sequence Length = 77135 Score = 110 bits (276), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 56/88 (63%), Positives = 67/88 (76%) Frame = -3 Query: 194 YGITSDDLFWLKDSPGKTLVVGASYVSLECAGFLTGIGLDTTVIMRIIMRSIPLRGFDQQ 253 + + SDDLF L PGKTLVVGASYV+LECAGFL GIGLD TV ++RSI LRGFDQ+ Sbjct: 30393 FILFSDDLFSLPHCPGKTLVVGASYVALECAGFLAGIGLDVTV----MVRSILLRGFDQE 30226 Query: 254 MASLVTEHMESYGTKFLKKCVPAKVEKL 281 MA+ + EHME +G KF+K+ VP KV L Sbjct: 30225 MANKIGEHMEEHGIKFIKQFVPTKVSLL 30142 Score = 78.6 bits (192), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 44/104 (42%), Positives = 51/104 (49%), Gaps = 43/104 (41%) Frame = -2 Query: 46 KEAAQFGKNVAVLDYVEPSPRGTKWG---------------------------------- 71 +EA ++ K V VLDYV P+P GT WG Sbjct: 34246 QEAVKYDKKVMVLDYVTPTPLGTSWGNFLLITDIL*RGISYYMALQFYFGIVFINT*YVL 34067 Query: 72 ---------LGGTCVNVGCIPKKLMHQAALLGGALKDAQHYGWS 106 LGGTCVNVGCIPKKLMHQAALLG ALKD++ +GW Sbjct: 34066 CLLSLLPQGLGGTCVNVGCIPKKLMHQAALLGQALKDSRKFGWQ 33935 Score = 67.8 bits (164), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 30/45 (66%), Positives = 34/45 (75%) Frame = -3 Query: 452 QRILGLHFIGPNAGEVIQGFALGIKCGATYPQLMKTIGIHPTCAE 496 +R++G H +GPNAGEV QGFA IKCG T QL TIGIHP CAE Sbjct: 10986 KRVIGFHVLGPNAGEVTQGFAAAIKCGLTKEQLDSTIGIHPVCAE 10852 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 26/47 (55%), Positives = 32/47 (68%) Frame = -3 Query: 111 VHHNWSVMAQAVQNYVKSLNWGHRVQLQDKKVKYFNMKGSFSDSHTV 157 V H+W M +AVQNY+ SLNWG+RV L+D KV Y N G F HT+ Sbjct: 32682 VKHSWETMTEAVQNYIGSLNWGYRVALRDNKVTYENAYGEFVGPHTI 32542 Score = 58.2 bits (139), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 26/50 (52%), Positives = 37/50 (74%) Frame = -1 Query: 332 TGKIIVDASEATSVPHIYAIGDITEGRPELTPTAIAAGKLLARRLFGHSS 381 +GKI + E T+VP+IYAIGD+ E + ELTP AI AG+LL +RL+ ++ Sbjct: 16535 SGKIPANDEEQTNVPYIYAIGDVLEDKLELTPVAIQAGRLLTQRLYAGAT 16386 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 24/36 (66%), Positives = 30/36 (83%) Frame = -3 Query: 385 DYDNVPTTVFTPLEYGCVGLSEEKAVQCYGSDNVEV 420 DY NVPTTVFTP+EYG G SEEKA++ +G +N+EV Sbjct: 14211 DYVNVPTTVFTPMEYGACGFSEEKAMEKFGENNIEV 14104 Score = 38.9 bits (89), Expect = 0.57, Method: Compositional matrix adjust. Identities = 13/28 (46%), Positives = 22/28 (78%) Frame = -1 Query: 419 EVFHAYYKPLEFTVAERDAAQCYIKMVC 446 +V+H+++ PLE+TV RD +CY K++C Sbjct: 12677 QVYHSFFWPLEWTVPGRDNNKCYAKIIC 12594 Score = 35.4 bits (80), Expect = 6.4, Method: Compositional matrix adjust. Identities = 19/34 (55%), Positives = 23/34 (67%) Frame = -1 Query: 164 GKETTLTAEKIVIATGGRPKYPTHITGALEYGIT 197 GKE TAEK +IATG RP+Y +I G EY I+ Sbjct: 32402 GKEKLYTAEKFIIATGERPRY-LNIPGDKEYCIS 32304 >KN333725.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic scaffold scaffold10983, whole genome shotgun sequence Length = 157996 Score = 98.2 bits (243), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 41/61 (67%), Positives = 56/61 (91%) Frame = -3 Query: 253 QMASLVTEHMESYGTKFLKKCVPAKVEKLESSRLQVTWKNTELGTEETDSFDTVMWAVGR 312 QM+SLV ++MES+GT+FLKKC+P KVE+L+S +LQV+WKN ++G EETDSFDTV+WAVG+ Sbjct: 125483 QMSSLVADYMESHGTRFLKKCIPTKVEELDSGKLQVSWKNADMGKEETDSFDTVIWAVGK 125304 Query: 313 V 313 + Sbjct: 125303 L 125301 Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 40/49 (81%), Positives = 46/49 (93%) Frame = -3 Query: 67 GTKWGLGGTCVNVGCIPKKLMHQAALLGGALKDAQHYGWSVAHPVHHNW 115 GT WGLGGTCVNVGCIPKKLMHQAALLG ALKDA+HYGW+++ P+HH+W Sbjct: 137234 GTSWGLGGTCVNVGCIPKKLMHQAALLGSALKDARHYGWNISQPIHHDW 137088 Score = 88.2 bits (217), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 43/54 (79%), Positives = 48/54 (88%) Frame = -3 Query: 305 TVMWAVGRVPDIKTLNLDSVGVKTNSETGKIIVDASEATSVPHIYAIGDITEGR 358 T ++ GRVPD KTLNL++VGVK NSETGKIIVDASEATSVPHIYA+GDITE R Sbjct: 114644 TSLFP*GRVPDAKTLNLETVGVKMNSETGKIIVDASEATSVPHIYAVGDITEVR 114483 Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 36/43 (83%), Positives = 40/43 (93%) Frame = -3 Query: 476 KCGATYPQLMKTIGIHPTCAEEITKLHITKRSGLDATVTGCUG 518 +CGATY Q+MKT+GIHPT AEE+TKLHITKRSGLDATVTGC G Sbjct: 102725 RCGATYSQMMKTVGIHPTSAEEVTKLHITKRSGLDATVTGC*G 102597 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 32/37 (86%), Positives = 36/37 (97%) Frame = -2 Query: 440 CYIKMVCLREREQRILGLHFIGPNAGEVIQGFALGIK 476 C+ +MVCLRE+EQR+LGLHFIGPNAGEVIQGFALGIK Sbjct: 104928 CF-QMVCLREKEQRLLGLHFIGPNAGEVIQGFALGIK 104821 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 31/35 (88%), Positives = 34/35 (97%) Frame = -1 Query: 355 TEGRPELTPTAIAAGKLLARRLFGHSSELMDYDNV 389 ++GRPELTPTAIAAGKLLARRLFG SSELMDYD+V Sbjct: 108886 SQGRPELTPTAIAAGKLLARRLFGQSSELMDYDSV 108782 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 28/32 (87%), Positives = 30/32 (93%) Frame = -2 Query: 389 VPTTVFTPLEYGCVGLSEEKAVQCYGSDNVEV 420 VPTTVFTPLEYGCVGLSEE+AV CYG+DN EV Sbjct: 108522 VPTTVFTPLEYGCVGLSEEEAVGCYGADNTEV 108427 Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 28/34 (82%), Positives = 30/34 (88%) Frame = -2 Query: 219 VSLECAGFLTGIGLDTTVIMRIIMRSIPLRGFDQ 252 VSLECAGFLTGIGLDTTV ++RSIPLRGFDQ Sbjct: 128178 VSLECAGFLTGIGLDTTV----MVRSIPLRGFDQ 128089 Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 25/27 (92%), Positives = 25/27 (92%) Frame = -2 Query: 114 NWSVMAQAVQNYVKSLNWGHRVQLQDK 140 N S MAQAVQNYVKSLNWGHRVQLQDK Sbjct: 136761 NRSTMAQAVQNYVKSLNWGHRVQLQDK 136681 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 23/29 (79%), Positives = 26/29 (89%) Frame = -2 Query: 419 EVFHAYYKPLEFTVAERDAAQCYIKMVCL 447 +V+HAYYKPLEFTVAERDA QCYIK+ L Sbjct: 106767 QVYHAYYKPLEFTVAERDATQCYIKVSVL 106681 Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust. Identities = 19/24 (79%), Positives = 22/24 (91%) Frame = -1 Query: 188 ITGALEYGITSDDLFWLKDSPGKT 211 + GAL+YGITSDD+FWLK SPGKT Sbjct: 133744 VAGALQYGITSDDIFWLKKSPGKT 133673 Score = 44.3 bits (103), Expect = 0.013, Method: Compositional matrix adjust. Identities = 21/23 (91%), Positives = 21/23 (91%) Frame = -2 Query: 26 GKKEYDLLVIGGGSGGLACAKEA 48 GK EYDLLVIGGGSGGLACAKE Sbjct: 139275 GKNEYDLLVIGGGSGGLACAKEG 139207 Score = 44.3 bits (103), Expect = 0.014, Method: Compositional matrix adjust. Identities = 19/21 (90%), Positives = 20/21 (95%) Frame = -2 Query: 47 EAAQFGKNVAVLDYVEPSPRG 67 EAAQFGK VAVLDYVEPSP+G Sbjct: 138618 EAAQFGKKVAVLDYVEPSPKG 138556 Score = 44.3 bits (103), Expect = 0.014, Method: Compositional matrix adjust. Identities = 22/54 (40%), Positives = 31/54 (57%) Frame = -1 Query: 135 VQLQDKKVKYFNMKGSFSDSHTVCGIAKGGKETTLTAEKIVIATGGRPKYPTHI 188 V ++KVKYFN+KGSF+D+HT+ G+ K GK + A R PT + Sbjct: 135646 VIFFNRKVKYFNLKGSFADAHTIHGLTKAGKGVSCLAGYYSTWFEARNSRPTSV 135485 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 17/22 (77%), Positives = 19/22 (86%) Frame = -2 Query: 168 TLTAEKIVIATGGRPKYPTHIT 189 TLTAE IVIATG RPKYPT ++ Sbjct: 134439 TLTAENIVIATGLRPKYPTDVS 134374 >KN323524.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic scaffold scaffold338, whole genome shotgun sequence Length = 47598 Score = 51.6 bits (122), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 24/49 (48%), Positives = 31/49 (63%) Frame = -2 Query: 453 RILGLHFIGPNAGEVIQGFALGIKCGATYPQLMKTIGIHPTCAEEITKL 501 +++GLH G E++QGFA+ IK GAT TI IHPT AEE+ L Sbjct: 41234 KVVGLHMQGLGCDEMLQGFAVAIKMGATKVDFDNTIAIHPTSAEELVTL 41088 >KN328625.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic scaffold scaffold5642, whole genome shotgun sequence Length = 45883 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 24/51 (47%), Positives = 31/51 (60%), Gaps = 1/51 (1%) Frame = +1 Query: 360 ELTPTAIAAGKLLARRLF-GHSSELMDYDNVPTTVFTPLEYGCVGLSEEKA 409 L AIAAG+ LA RLF G +DY N+PT VF+ G VGL+E ++ Sbjct: 44113 SLLTVAIAAGRKLAHRLFEGKKDSKLDYSNIPTVVFSHPPIGTVGLTEGRS 44265 >KN329011.1 Gavialis gangeticus isolate Ggan-Ray unplaced genomic scaffold scaffold6000, whole genome shotgun sequence Length = 217412 Score = 36.2 bits (82), Expect = 3.5, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 33/61 (54%) Frame = -2 Query: 348 IYAIGDITEGRPELTPTAIAAGKLLARRLFGHSSELMDYDNVPTTVFTPLEYGCVGLSEE 407 IYAIGD+ G P L A G L + G + + DY+ VP+ ++T E VG SEE Sbjct: 168613 IYAIGDVVAG-PMLAHKAEDEGILCVEGMAGGAVHI-DYNCVPSVIYTHPEVAWVGKSEE 168440 Query: 408 K 408 + Sbjct: 168439 Q 168437 Database: genome.fa Posted date: Sep 15, 2015 12:21 AM Number of letters in database: 2,188,353,730 Number of sequences in database: 47,351 Lambda K H 0.319 0.136 0.415 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 47351 Number of Hits to DB: 1,530,527,713 Number of extensions: 26000937 Number of successful extensions: 106214 Number of sequences better than 10.0: 6 Number of HSP's gapped: 106188 Number of HSP's successfully gapped: 38 Length of query: 518 Length of database: 729,451,243 Length adjustment: 134 Effective length of query: 384 Effective length of database: 723,106,209 Effective search space: 277672784256 Effective search space used: 277672784256 Neighboring words threshold: 13 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 53 (25.0 bits)