RESULTS

The following table shows all selenoproteins and selenoprotein machinery genes that have been found in Urocitellus parryii. The legend of the table is shown in this image:


Selenoproteins

This table shows the genes encoding selenoproteins:

Protein
Query
BLAST
Scaffold
Initial position
Final position
Exonerate
Tcoffee
SECIS
SECIS image
Protein prediction
DIO
DIO1
QVIC01000022.1
5209759
5218191
DIO2
QVIC01000009.1
7764302
7772754
DIO3
QVIC01000918.1
177323
178111
GPx
GPx1_1
QVIC01000027.1
8616803
8617598
GPx1_2
QVIC01000037.1
4264843
4267607
GPx2_1
QVIC01000027.1
8616800
8617577
GPx2_2
QVIC01000037.1
4264834
4267622
GPx3_1
QVIC01000223.1
3052085
3054807
GPx3_2
QVIC01000637.1
354871
411016

GPx4
QVIC01000612.1
420792
421592
GPx5_1
QVIC01000223.1
3052082
3054795
GPx5_2
QVIC01000415.1
1567736
1568169
GPx5_3
QVIC01000637.1
354859
411028

GPx6_1
QVIC01000027.1
8616803
8617595
GPx6_2
QVIC01000223.1
3052085
3054786
GPx6_3
QVIC01000637.1
354862
411025

GPx7
QVIC01000022.1
6479268
6485461
GPx8
QVIC01000042.1
3351660
3355652
MsrA
MsrA
QVIC01000204.1
1052141
1383186
Sel15
Sel15
QVIC01000289.1
383681
417796
SelH
SelH
QVIC01000337.1
1268971
1269349
SelI
SelI_1
QVIC01000001.1
7914791
7937334

SelI_2
QVIC01009008.1
3
101
SelK
SelK_1
QVIC01000061.1
1577839
1579442
SelK_2
QVIC01000157.1
3615266
3615453
SelM
SelM
QVIC01000404.1
835590
835916
SelN
SelN
QVIC01000093.1
5212494
5224736
SelO
SelO
QVIC01000590.1
484334
502526
SelP
SelP
QVIC01000039.1
86117
92599
SelR
SelR1
QVIC01000038.1
2916500
2917093
SelR2
QVIC01000241.1
171496
181530
SelR3
QVIC01000046.1
209032
318665
SelS
SelS
QVIC01000145.1
418327
440266
SelT
SelT
QVIC01000380.1
315951
334480
SelU
SelU1
QVIC01000340.1
292138
301982
SelU2
QVIC01000808.1
64421
72278
SelU3
QVIC01000810.1
38113
40059
SelV
SelV
QVIC01000501.1
1042944
1043187
SelW
SelW1
QVIC01000457.1
1339809
1339883
SelW2
QVIC01000047.1
5057240
5058218
SPS
SPS1_1
QVIC01000220.1
3214518
3215686
SPS1_2
QVIC01000450.1
1363449
1392350
SPS2
QVIC01000230.1
3087899
3089137
TR
TR1_1
QVIC01000007.1
3511063
3533928
TR1_2
QVIC01000475.1
1171051
1195523

TR2_1
QVIC01000007.1
3511066
3533928

TR2_2
QVIC01000253.1
657031
701053
TR2_3
QVIC01000475.1
1171051
1195520
TR3_1
QVIC01000007.1
3511063
3533928

TR3_2
QVIC01000137.1
1965078
1966713

TR3_3
QVIC01000475.1
1166962
1195523

Selenoprotein Machinery

This table shows the genes encoding selenoprotein machinery:

Protein
Query
BLAST
Scaffold
Initial position
Final position
Exonerate
Tcoffee
SECIS
SECIS image
Protein prediction
SBP2
SBP2
QVIC01000360.1
1034995
1069639
eEFSec
eEFSec
QVIC01000475.1
398640
514018