_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 3e-19
 Query name: gi|6649223|gb|AAF21431.1|AF166126_1 selenoprotein Zf1 [Homo sapiens]
 Query range: 1-277  (total 277)

 Target: /data/www-rg/seblastian_results/385103952/tempfiles/temptarget.fasta
 Chromosome: QVIC01000253.1: Strand: +
 Positions:
 -Exon 1  70705        70737
 -Exon 2  71208        71382
 -Exon 3  84670        84806
 -Exon 4  88210        88305
 -Exon 5  88657        88749
 -Exon 6  90689        90760
 -Exon 7  90964        91061
 -Exon 8  93896        94022

 Redox box: no

Query   MRSIPLRGFDQ <---Intron---> QMSSMVIEHMASHGTRFLRGCAPSRVRRLPDGQLQVTWEDSTTGKEDTGTFDTVLWAIG <---Intron---
        ||||||||||| <   470bp    > ||||/|/||| ||||/||/|| |/ //||||||||||||| |/||/||| ||||||||| <  13287bp   
Target  MRSIPLRGFDQ                QMSSLVMEHMESHGTQFLKGCIPTCIKRLPDGQLQVTWEDRTSGKKDTGIFDTVLWAIG              
        acaacccgtgc                catttgagcagtcgactcagtacataaaccggcccgatggcatgaagagatgagctgag              
        tggtctggtaa                atcctttaatacagcattaggtccgtagtcagatatcgaagccgaaacgttacttgct               
        gctcctgctcg                agttgcggcggttccacggtccccccggtatcacgtcggccctcggcacctctcggca               
                                                                                                            

Query   > RVPDTRSLNLEKAGVDTSPDTQKILVDSREATSVPHIYAIGDVVE <---Intron---> GRPELTPTAIMAGRLLVQRLFGGSSDLMDYDN <---
        > |/|/||/|||// ||/ /|/ |||/||/// |||||||||||| | <   3403bp   > |||||||||||||/|| ||||| |||||||/| <   
Target    RIPETRNLNLKEVGVNINPENQKIIVDAQDVTSVPHIYAIGDVAE                GRPELTPTAIMAGKLLAQRLFGQSSDLMDYNN     
          cacgaaacacaggggaaacgacaaagggcggatgccatgaggggg                gccgcacagaaggaccgccctgcttgcagtaa     
         ggtcacgatataatgtatacaaaatttacaatcctcatactgatca                ggcatccccttcgattcagttgaccattaaaa     
         tataacatgtggatagtactgtagctttcgtcctcccctctatttg                ggtggacatcgaggtgcggctaacacggttct     
                                                                                                            

Query   Intron---> VPTTVFTPLEYGCVGLSEEEAVARHGQEHVE <---Intron---> VYHAHYKPLEFTVAGRDASQCYVK <---Intron---> MV
        351bp    > |||||||||||||||||||||||||||||/| <   1939bp   > ||||/||||||||| |||||||/| <   203bp    > /|
Target             VPTTVFTPLEYGCVGLSEEEAVARHGQEHIE                VYHAYYKPLEFTVAERDASQCYIK                LV
                   gcaagtactgtgtggttggggggccgcgcag                gtcgttaccgtagggcggtcttaa                tg
                   tcccttcctaaggtgtcaaactcgagaaata                taacaaactatctcagaccagata                tt
                   tcttcctagatctgggaaggtgtctaagttg                ttcattaaagcagtaatacgtcag                gg
                                                                                                            

Query   CLREPPQLVLGLHFLGPNAGEVTQGFALGIK <---Intron---> CGASYAQVMRTVGIHPTCSEEVVKLRISKRSGLDPTVTGCUG
        ||/|||||||||||||||||||||||||||| <   2834bp   > ||||||||||||||||||||||||||||||||||||||||||
Target  CLKEPPQLVLGLHFLGPNAGEVTQGFALGIK                CGASYAQVMRTVGIHPTCSEEVVKLRISKRSGLDPTVTGCUG
        tcagccccgcgcctcgcaggggacgtgcgaa                tggttgcgaaaggaccattggggaccatactgcgcagagttg
        gtaaccatttgtattgcacgatcagtctgta                ggccacattgctgtaccgcaattatgtcagcgtacctcgggg
        cgggcaggggcgccccccttattaattggc                acgcgtaggggagcccccttgggcgatccgcacgcttgtccat
                                                                                               * 
 Sequence until next stop: 
TAA
 * 

 Distance CDS-SECIS: 1367 ; UGA-SECIS: 1370

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = QVIC01000253.1: Strand = + Positions = 95390 - 95463
 Found by:  Infernal (score=35.63) Covels (score=39.03)
 Stem2 length = 10   Apical loop length = 16   Insertion in stem2 = 0, 0
 Free Energy = -23.89

         ..(((((((.......(((((((((((((((................)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcC-cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         .((((((((.--....([[{((({(((((((................)))))))})))}]])..--..-.)))))))).
 target  UAAAUGCCAA--AUGAUGACGGCCUGGGCAGAAACCCACUCUGUGGGCUGCCCAUGUCCGAGCC--CC-CUGGCGUUUC
                         ****           ^^^                        ****