_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 1e-26
 Query name: gi|914930242|ref|XP_005341979.2| PREDICTED: glutathione peroxidase 6 [Ictidomys tridecemlineatus]
 Query range: 1-221  (total 221)

 Target: /data/www-rg/seblastian_results/135925153/tempfiles/temptarget.fasta
 Chromosome: QVIC01000637.1: Strand: +
 Positions:
 -Exon 1  98428        98514
 -Exon 2  101341       101494
 -Exon 3  103717       103834
 -Exon 4  104554       104653
 -Exon 5  105954       106157

 Redox box: no

Query   MNWQFQATCLFPLFLIGFCQEILKPQMVK <---Intron---> MDCNKGVTGTIYEYGALTLSGEEYIQFKKYAGKHVLFVNVATYUGLTAQYPE <-
        |||||| |||||||||||||||||||||| <   2826bp   > |||||||||||||||||||||||||||||||||||||||||||||||||||| < 
Target  MNWQFQTTCLFPLFLIGFCQEILKPQMVK                MDCNKGVTGTIYEYGALTLSGEEYIQFKKYAGKHVLFVNVATYUGLTAQYPE   
        aatctcaatctcttcagttcgacaccaga                agtaaggagaatgtggcacagggtactaatggacgctgaggattgtagctcg   
        tagataccgttcttttgtgaattacatta                tagaagtcgctaaagctctggaaatataaacgaattttatccaggtccaac    
        gcggcgcttttggcgtcctggcggaaggg                gtccaggtccctgtacctcttggccgcagttcgttctccgcctacgatgtt    
                                                                                                *           

Query   --Intron---> LNALQEELKHLDVIVLGFPCNQFGKQEPGKNSEILSGLK <---Intron---> YVRPGGGFVPNFQLFEKGDVNGEKEQKVFTFL
          2222bp   > ||||||||||||||||||||||||||||||||||||||| <   719bp    > ||||||||||||||||||||||||||||||||
Target               LNALQEELKHLDVIVLGFPCNQFGKQEPGKNSEILSGLK                YVRPGGGFVPNFQLFEKGDVNGEKEQKVFTFL
                     cagccggcactggagtgtctactgacgcgaatgactgca                tgccgggtgcatcctgagggaggagcagtatc
                    atactaaataatattttgtcgaatgaaacgaacattcgta                atgcgggttcatattaagatagaaaaattctt
                    agtaggggggtatctggcttttataaaaaaacagtctgt                gtgtattctccttgctgattataaaaggctacc
                                                                                                            

Query   K <---Intron---> NSCPPTSELLGSSKQLFWEPMKVHDIRWNFEKFLVGPDGVPVMRWFHQIPVSTVKLDILEYLKQFDTQ
        | <   1300bp   > ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Target  K                NSCPPTSELLGSSKQLFWEPMKVHDIRWNFEKFLVGPDGVPVMRWFHQIPVSTVKLDILEYLKQFDTQ
        a                attccatgctgttaccttgcaagcgactatgatcggcgggcgacttccacgaagatgacgtcactgac
        a                acgccccattgccaattgactataatggataatttgcagtcttggtaatctgctatattaataataca
        g                tcctactatgttaaaccggcgacttccgctggcgggttactcgcgccgtactacagccgacaggttcg
                                                                                             
 Sequence until next stop: 
TAG
 * 

 Distance CDS-SECIS: 170 ; UGA-SECIS: 614

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = QVIC01000637.1: Strand = + Positions = 106328 - 106403
 Found by:  Infernal (score=30.28) Covels (score=22.74)
 Stem2 length = 9   Apical loop length = 17   Insertion in stem2 = 0, 1
 Free Energy = -25.13

         ..(((((((.......(((((((((((((((...............))))))).))))))))..........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggcca-ggcCuGAUGuu-u-uuucaugaccggc
         (({(((((((--....([[(((((-(((((.................)))))-.)))))]])......-..)))))))}))
 target  GAGGGGCAUU--UCCAUGAUGGUG-GGUCCUAAAGCCCCUCUGAGCUGGACC-CCACCAGAACCUUCC-UUGGUGCCUGUC
                         ****           ^^^                        ****