_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:QUE_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
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 Blastx evalue: 4e-14
 Query name: gi|1012197853|ref|XP_016011848.1| PREDICTED: selenoprotein K [Rousettus aegyptiacus]
 Query range: 1-94  (total 94)

 Target: /data/www-rg/seblastian_results/345142966/tempfiles/temptarget.fasta
 Chromosome: QVIC01000061.1:NubNeq(1527839,101603) Strand: -
 Positions:
 -Exon 1  54901        54919
 -Exon 2  51497        51587
 -Exon 3  49992        50075
 -Exon 4  49095        49182

 Redox box: no

Query   MVYISNG <---Intron---> QVLDSRSQSPWRLSLITDFFWGIAEFVVLF <---Intron---> FKTLLQQDVKKRRGYGNSSDSRYDDGRG <-
        ||||||| <   3313bp   > |||||||||||||||||||||||||||||| <   1421bp   > |||||||||||||||||||||||||||| < 
Target  MVYISNG                QVLDSRSQSPWRLSLITDFFWGIAEFVVLF                FKTLLQQDVKKRRGYGNSSDSRYDDGRG   
        agtatag                cgtgacactctacttaagtttgaggtggtt                taaccccggaaaagtgattgtatgggag   
        ttatca                gattagggaccggtcttcattggtcattttt                tacttaaataagggagaccacgaaaggg   
        gtccgc                aaggccgtgcagaatgaatctgaatgtgtg                ttatgtgatgaaaactacattcatttaa    
                                                                                                            

Query   --Intron---> PPGNPPRRMGRINHLRGPNPPPMAGGUGR
          809bp    > |||||||||||||||/||/|||| |||||
Target               PPGNPPRRMGRINHLQGPSPPPMGGGUGR
                     ccgacccaagcaacccgcacccagggtga
                     ccgaccggtggtaatagcgccctgggggg
                    gaaactcaagtacttcgccctcagttaaag
                                               *  
 Sequence until next stop: 
TAA
 * 

 Distance CDS-SECIS: 390 ; UGA-SECIS: 396

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = QVIC01000061.1:NubNeq(1527839,101603) Strand = - Positions = 48704 - 48617
 Found by:  Infernal (score=21.43) Covels (score=36.22)
 Stem2 length = 10   Apical loop length = 17   Insertion in stem2 = 0, 0
 Free Energy = -8.23

         ..(((((((..............(((((((((((((((.................)))))))))))))))..........)))))))..
 model   uucggucaugcg-------UuaAUGAcGgccuggcccuAAAcC--cuuuuuggggcgggccaggcCuGAUGuu-u-uuucaugaccggc
         ...({((((..............{[[((((({((((((.................))))))})))))]]}......-...))))})...
 target  UGCUCUGUGUCCUCACAGAUCAAUGAGGUCAUGCUGGGAAUUCCCUCUGCAGGGAUCUGGCCUGACUGACAUGCAA-GUCCAUAAAUGC
                                ****           ^^                          ****