------- SECIS element -- id:1 -- grade:B ----
 Chromosome = QVIC01000204.1:NubNeq(1002141,431045) Strand = + Positions = 176885 - 176952
 Found by:  Infernal (score=12.67) Covels (score=11.84)
 Stem2 length = 11   Apical loop length = 9   Insertion in stem2 = 0, 0
 Free Energy = -7.7

         ..(((((((.......(((((((((((((((...............)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ...({(({((......([[{((([(((((((.....-..-----..)))))))])))}]])----...))}))})...
 target  AAGGAGUGUGUGUGUGUGAUGUGAAGACAUGCAUAC-AC-----GACGUGUCUGCACUGAG----CCUUGGAUCUGGC
                         ****                                     ****                 

------- SECIS element -- id:2 -- grade:B ----
 Chromosome = QVIC01000204.1:NubNeq(1002141,431045) Strand = - Positions = 97012 - 96970
 Found by:  Infernal (score=11.54) Covels (score=2.67)
 Stem2 length = 9   Apical loop length = 17   Insertion in stem2 = 0, 0
 Free Energy = -6.13

         ..(((((((.......(((((((((((((((...............)))))))))))))))........)))))))..
 model   uccgggcaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugcccggc
         -----------------[[[({((((((((.................))))))))})]]]------------------
 target  -----------------GAAGAUCUUGCCUAAAACCUUUUUAAAAGCAGGUAAGGAUGGA------------------
                          ***          ^^^                        ***                  

------- SECIS element -- id:3 -- grade:B ----
 Chromosome = QVIC01000204.1:NubNeq(1002141,431045) Strand = + Positions = 158501 - 158568
 Found by:  Infernal (score=11.0) Covels (score=9.54)
 Stem2 length = 8   Apical loop length = 11   Insertion in stem2 = 0, 0
 Free Energy = -12.22

         ..(((((((........(((((((((((((...................)))))))))))))........)))))))..
 model   uucggucaugcg-UuaAUGAcGgccuggcccgAAAcCcuuuuuggggugggccaggcCuGAUGuuuuuucaugaccggc
         ...((((((........([[(((((({(((...........--------)))}))))))]])..--..-.))))))...
 target  GUGAGGUCAGCCAAAGAUGAAGUCUAUGCUUUGUGUCCUGU--------AGCUUAGGCUGAGGC--AC-AUGGUCUGUG
                          ****                                     ****                 

------- SECIS element -- id:4 -- grade:B ----
 Chromosome = QVIC01000204.1:NubNeq(1002141,431045) Strand = - Positions = 29423 - 29350
 Found by:  Infernal (score=10.49) Covels (score=1.28)
 Stem2 length = 7   Apical loop length = 13   Insertion in stem2 = 0, 1
 Free Energy = -5.31

         ..(((((((.........(((((((((((((((...............))))))))).)))))).........)))))))..
 model   uucggucaugcg--UuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccagg-cCuGAUGuuu-uuucaugaccggc
         ..((({(((.........([[{{({((((((.......-..-----....))))))}.)}}]]).....-.-.)))})))..
 target  UCCAUGCCUUCAGGUCCGUGACAUCCGAAAGGCAAAUG-GG-----UACACUUUCGACACUGAAGUUCA-G-UGGGGAUGUG
                           ****           ^^^                        ****