_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 3e-11
 Query name: gi|984088974|ref|XP_015335384.1| PREDICTED: ethanolaminephosphotransferase 1 [Marmota marmota marmota]
 Query range: 1-397  (total 397)

 Target: /data/www-rg/seblastian_results/988740865/tempfiles/temptarget.fasta
 Chromosome: QVIC01000001.1: Strand: -
 Positions:
 -Exon 1  103465       103521
 -Exon 2  72472        72540
 -Exon 3  71802        71910
 -Exon 4  69282        69356
 -Exon 5  63598        63860
 -Exon 6  62414        62522
 -Exon 7  55605        55653
 -Exon 8  53786        53966
 -Exon 9  52448        52540
 -Exon 10 50000        50095

 Redox box: no

Query   MAGYEYVSPEQLAGFDKYK <---Intron---> YSAVDTNPLSLYIMHPFWNTLVK <---Intron---> AFPTWLAPNLITFSGFLLVVFNFLLM
        ||||||||||||||||||| <  30924bp   > ||||||||||||||||||||||| <   561bp    > ||||||||||||||||||||||||||
Target  MAGYEYVSPEQLAGFDKYK                YSAVDTNPLSLYIMHPFWNTLVK                AFPTWLAPNLITFSGFLLVVFNFLLM
        aggtgtgacgccggtgata                tagggaacctttaaccttaatga                gtcattgcacaattgtccggtatcca
        tcgaaatgcaatcgtaaaa                agctacactctattactgactta                ctccgtccattctcgttttttatttt
        gtccacgcggggtcttacg                cttgtccactgccgtacgctagg                atttggtctgacctctggtatctatg
                                                                                                            

Query   AYFDPDFYASA <---Intron---> PGHKHVPDWVWIVVGILNFMAYTLD <---Intron---> GVDGKQARRTNSSTPLGELFDHGLDSWSCVYF
         |||||||||| <   2445bp   > ||||||||||||||||||||||||| <   5421bp   > ||||||||||||||||||||||||||||||||
Target  TYFDPDFYASA                PGHKHVPDWVWIVVGILNFMAYTLD                GVDGKQARRTNSSTPLGELFDHGLDSWSCVYF
        attgcgttgtg                cgcacgcgtgtagggacatagtacg                ggggacgcaaataactggctgcgcgatttgtt
        catacatacc                ccgaaatcagtgtttgttattcact                agtagaacggcacgcctgattaagtaggcgtat
        actttcttta                aatcgtattgtgttgcccctgtctt                ttgtagaccacttcccaggttctcgttgattct
                                                                                                            

Query   VVTVYSIFGRGPTGVSVFVLYLLLWVVLFSFILSHWEKYNTGILFLPWGYDVSQV <---Intron---> TISFVYIVTAIVGVEAWYEPFLFNFLYRD
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||| <   1075bp   > |||||||||||||||||||||||||||||
Target  VVTVYSIFGRGPTGVSVFVLYLLLWVVLFSFILSHWEKYNTGILFLPWGYDVSQV                TISFVYIVTAIVGVEAWYEPFLFNFLYRD
        ggagttatgcgcaggagtgctccttggttttactctgataagactcctgtggacg                aattgtagagagggggttgctctatttag
        ttctacttgggccgtgttttatttgttttctttcagaaaacgttttcggaatgat                ctcttattccttgtacgaactttattaga
        tatgtcctaaaattcttttttcaagttgttccgtcgaatcaatttgagctctcgg                ttttccaggatgatgcgtatcgttcatac
                                                                                                            

Query   LFTTMIIG <---Intron---> CAVFVTLPMSLLNFFR <---Intron---> SYKNNTLKHNSVYEAMVPFFSPCLLFILSTAWILWSPSDILELH
        |||||||| <   6760bp   > ||/||||||||||||| <   1638bp   > ||||||||||||||||||||||||||||||||||||||||||||
Target  LFTTMIIG                CAIFVTLPMSLLNFFR                SYKNNTLKHNSVYEAMVPFFSPCLLFILSTAWILWSPSDILELH
        ctaaaaag                tgatgaccaattatta                ataaaatacatgtggagctttcttctattagtacttctgatgcc
        ttccttt                ggctttctctgttattg                gaaaactaaactaacttcttccgtttttcccgttgcccattata
        acaagtt                ttaatgttagtaactc                actatccgactactatgtccttatgcctgtacgccgatattagat
                                                                                                            

Query   PRVFYFMVGTAFANIT <---Intron---> CQLIVCQMSSTRCPTLNWLLVPLFLVVIAVNLGVVSYLESLLLYLLTTGFTLAHIHYGVRV <---In
        |||||/|||||||||| <   1245bp   >                               |||| |||||||||||||||||||||||||| <   23
Target  PRVFYYMVGTAFANIT                ------------------------------NLGVASYLESLLLYLLTTGFTLAHIHYGVRV       
        cagtttaggagtgaaa                ------------------------------acgggttcgaccctttaagtacgcactggcg       
        cgttaattgcctcatc                ------------------------------atgtccatagtttattccgtctcataagtgt       
        taacctgtaattccca                ------------------------------cgaactcggttcgtaaatcttgcccttaaag       
                                                                                                            

Query   tron---> VKQLSSHFQIYPFSLKKPNSDULGMEEKNIGL
        52bp   > ||||||||||||||||||||||||||||||||
Target           VKQLSSHFQIYPFSLKKPNSDULGMEEKNIGL
                 gaccaactcatctttaacatgtcgaggaaagc
                 taatggatatactctaacacagtgtaaaatgt
                 tgggccttattccaggaccataaagaagctcg
                                      *          
 Sequence until next stop: 
TAA
 * 

 Distance CDS-SECIS: 1271 ; UGA-SECIS: 1301

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = QVIC01000001.1: Strand = - Positions = 48728 - 48647
 Found by:  Infernal (score=25.94) Covels (score=16.07)
 Stem2 length = 10   Apical loop length = 22   Insertion in stem2 = 0, 0
 Free Energy = -5.95

         ..(((((((.......(((((((((((((((......................)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcC-------cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ...(({({((......{[[[((((((({(((......................)))})))))))]]]}..--..-))})}))...
 target  GAAGUUUGUGCUUGAAUGAAGAGUGUAUCUUAAACCCUUAUUUCUUUUUGGACAGGUUGCACUUGGAUAA--AA-UAGGCACCAC
                         ****           ^^^                              ****