_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 1e-42
 Query name: gi|914904651|ref|XP_005343086.2| PREDICTED: glutathione peroxidase 2 [Ictidomys tridecemlineatus]
 Query range: 1-190  (total 190)

 Target: /data/www-rg/seblastian_results/274812206/tempfiles/temptarget.fasta
 Chromosome: QVIC01000037.1: Strand: -
 Positions:
 -Exon 1  52558        52779
 -Exon 2  49991        50338

 Redox box: no

Query   MAYIAKSFYDLSAISLDGEKVDFNTFRGRAVLIENVASLUGTTTRDFTQLNDLQCRFPRRLVVLGFPCNQFGHQ <---Intron---> ENCQNEEILN
        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| <   2219bp   > ||||||||||
Target  MAYIAKSFYDLSAISLDGEKVDFNTFRGRAVLIENVASLUGTTTRDFTQLNDLQCRFPRRLVVLGFPCNQFGHQ                ENCQNEEILN
        agtagatttgcagaacgggaggtaatcgaggcagaggtctgaaacgtaccagcctctcaccggcgtctactgcc                gatcaggaca
        tcatcactaatgctgtagaatatactgggctttaatcctggcccgatcataataggtcggttttgtcgaatgaa                aagaaaatta
        gccccgtctcttcccgtcgggtccccaagagctgtgctcactccgcccacccgacctcgcggtttctccatatg                gctgtggcgc
                                               *                                                            

Query   SLKYVRPGGGYQPTFTLLQKCEVNGQNEHPVFAYLKDKLPYPHDDPFSLMTDPKFIIWSPVRRSDVSWNFEKFLIGPEGEPFRRYSRTFPTINIEPDIKR
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Target  SLKYVRPGGGYQPTFTLLQKCEVNGQNEHPVFAYLKDKLPYPHDDPFSLMTDPKFIIWSPVRRSDVSWNFEKFLIGPEGEPFRRYSRTFPTINIEPDIKR
        acatgccgggtccatacccatggagcagccgtgtcagacctccggcttcaagcataatacgcctggttatgatcagcgggctcctacatcaaaagcgaac
        gtaatgcgggaacctcttaagatagaaaacttcataaatcacaaactcttcacatttggctggcatcgataatttgcagactggaggctcctatacatag
        tcgtccagtacgcctttcagtggtggcgtcccccggcggccgttcttccgctcgcctgtagtcatgcgctggccagggggccacccgcccccccggccgc
                                                                                                            

Query   LLKVAI
        ||||||
Target  LLKVAI
        ccagga
        ttatct
        ccatca
              
 Sequence until next stop: 
TAG
 * 

 Distance CDS-SECIS: 218 ; UGA-SECIS: 668

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = QVIC01000037.1: Strand = - Positions = 49772 - 49708
 Found by:  Infernal (score=34.27) Covels (score=28.84)
 Stem2 length = 9   Apical loop length = 11   Insertion in stem2 = 0, 0
 Free Energy = -25.0

         ..(((((((.......(((((((((((((((...............)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ..(((((((---(...([[{(((((({(((......-..-----...)))}))))))}]])----...))))))))..
 target  GGCCUUCAC---AGAAUGAUGGCACCUUCCUAAAUC-CU-----UAUGGGUGGUGUCUGAG----AAGUGUGAAGGGC
                         ****           ^^^                       ****