------- SECIS element -- id:1 -- grade:B ----
 Chromosome = QVIC01000475.1 Strand = - Positions = 42701 - 42609
 Found by:  Infernal (score=15.25) Covels (score=10.38)
 Stem2 length = 10   Apical loop length = 23   Insertion in stem2 = 0, 0
 Free Energy = -18.05

         ..(((((((.............((((((((((.(((((.....................))))).))))))))))..........)))))))..
 model   uucggucaugcg------UuaAUGAcGgccug-gcccuAAAcC------cuuuuuggggcgggc-caggcCuGAUGuu-u-uuucaugaccggc
         .((((({((.............([[{{((((((((((.......................))))))))))}}]])......-...))}))))).
 target  CUGAGAUUCCAUUGAACCCUCAUGAAAUACUGAGUACUAAAUACUCAGGUGGAAUAUUGUGUACUCAGUACAGAGAUCCCA-UUUGAUUCUCAU
                               ****            ^^^                              ****                   

------- SECIS element -- id:2 -- grade:B ----
 Chromosome = QVIC01000475.1 Strand = + Positions = 169952 - 170021
 Found by:  Infernal (score=14.27) Covels (score=0.96)
 Stem2 length = 9   Apical loop length = 16   Insertion in stem2 = 1, 0
 Free Energy = -12.59

         ..(((((((.......((((((((((.(((((...............)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccug-gcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         .....({((---....{[[(((((((.{(((......-..........)))})))))))]]}----..-.))}).....
 target  UACCGGCAG---CUGGUGAUGAGCGCAGGCCUGAGCC-AAUGGAGAGCGGCGGCGCUCGGAU----CU-CCUCCAAUGG
                         ****                                      ****                 

------- SECIS element -- id:3 -- grade:A ----
 Chromosome = QVIC01000475.1 Strand = + Positions = 212452 - 212538
 Found by:  Infernal (score=12.27) Covels (score=19.41)
 Stem2 length = 10   Apical loop length = 19   Insertion in stem2 = 1, 0
 Free Energy = -17.91

         ..(((((((............((((((((((.(((((.................)))))))))))))))..........)))))))..
 model   uucggucaugcg-----UuaAUGAcGgccug-gcccuAAAcC--cuuuuuggggcgggccaggcCuGAUGuu-u-uuucaugaccggc
         .((((((((............{[{(((((((.((((...................)))))))))))}]}......-...)))))))).
 target  CAUUCCUGAGGCCCAGACGGAUGGAGGUUUCCUGUCCCCACCCCUGACCAGGGGUGACAGGGACCUGACCUGGUC-AUGUCAGGAGUA
                              ****           ^^                           ****                   

------- SECIS element -- id:4 -- grade:C ----
 Chromosome = QVIC01000475.1 Strand = - Positions = 32929 - 32855
 Found by:  Infernal (score=11.27) Covels (score=0.98)
 Stem2 length = 7   Apical loop length = 19   Insertion in stem2 = 0, 0
 Free Energy = -10.21

         ..(((((((.......(((((((((((((((...............)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         .({(((((((......([[({(((({(((...................)))}))))})]])..--..-)))))))}).
 target  GUCCCAGGCGUUUCCAUGAAAGCAGAAGAAGCAGCCACCCACCCCCAAUUUCCUGUCUGAACC--GC-UGCUUGGAGG
                         ****                                     ****                 

------- SECIS element -- id:5 -- grade:C ----
 Chromosome = QVIC01000475.1 Strand = + Positions = 171804 - 171884
 Found by:  Infernal (score=10.33) Covels (score=1.17)
 Stem2 length = 8   Apical loop length = 15   Insertion in stem2 = 0, 0
 Free Energy = -25.86

         ..(((((((............((((((((((.(((((...................))))).))))))))))........)))))))..
 model   uucggucaugcg-----UuaAUGAcGgccug-gcccuAAAcC----cuuuuuggggcgggc-caggcCuGAUGuuuuuucaugaccggc
         (((((((((((((........([[{(((({({{(((------...............)))}})}))))}]])..--)))))))))))))
 target  CCAGGGCCUUGUAAAAAUCCGUGACGGGCUGUGGCU------GUGACUCAGUGGUGGAGCGCUUGCCUUGAAUG--UGUGAGGCCCUGG
                              ****                                           ****