_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:QUE_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 1e-38
 Query name: gi|914908770|ref|XP_013214376.1| PREDICTED: type I iodothyronine deiodinase [Ictidomys tridecemlineatus] >gi|914908772|ref|XP_013214377.1| PREDICTED: type I iodothyronine deiodinase [Ictidomys tridecemlineatus]
 Query range: 111-249  (total 249)

 Target: /data/www-rg/seblastian_results/270077212/tempfiles/temptarget.fasta
 Chromosome: QVIC01000022.1: Strand: -
 Positions:
 -Exon 1  58288        58438
 -Exon 2  52879        53078
 -Exon 3  50000        50065

 Redox box: no

Query   IQGNRPLVLNFGSCTUPSFLFKFDQFKRLIEDFSPIADFLIIYIEEAHASD <---Intron---> GWAFKNNVDIKIHQNLQDRLWAAHMLLAKSPQC
        | |||||||||||||||||||||||||/||||||||||||||||||||||| <   5209bp   > |||||||||||||||||||||||||||||||||
Target  ILGNRPLVLNFGSCTUPSFLFKFDQFKKLIEDFSPIADFLIIYIEEAHASD                GWAFKNNVDIKIHQNLQDRLWAAHMLLAKSPQC
        atgaaccgcatgatatcttctatgctaacaggtacaggtcaatagggcgtg                gtgtaaaggaaaccaccgcctggcaccgaacct
        ttgagctttatgggcgcctttataataattaatgctcattttataacacc                aggctaaatatataaataagtgccatttcagcag
        taccaagggttatccatattcatcacgattacttcaattcccctaaataa                tcgttgttgccgttgccgccagaccgggcgtcgc
                       *                                                                                    

Query   PVVVDTMQNQSSQLYAALPERLYVLQEGRILYK <---Intron---> GKPGPWNYHPEEVRAVLEKLLS
        |||||||||||||||||||||||/||||||||| <   2813bp   > |||||||||||||||||||| |
Target  PVVVDTMQNQSSQLYAALPERLYILQEGRILYK                GKPGPWNYHPEEVRAVLEKLHS
        cggggaacacaacctggccgactaccggaacta                gacgctatccgggcggcgacca
        ctttactaaaggatacctcagtattaaggttaa                gacgcgaaacaatgcttaatag
        tgggccggcgccgccacgcggccacggcgcccg                tatctgcctagattttgagcct
                                                                               
 Sequence until next stop: 
TAA
 * 

 Distance CDS-SECIS: 1289 ; UGA-SECIS: 1658

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = QVIC01000022.1: Strand = - Positions = 48710 - 48641
 Found by:  Infernal (score=28.04) Covels (score=21.12)
 Stem2 length = 8   Apical loop length = 14   Insertion in stem2 = 0, 0
 Free Energy = -9.14

         ..(((((((.......(((((((((((((((...............))))))))))))))).........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuu-uuucaugaccggc
         ...((((((.--....{[[{(({((((((..........-----....))))))}))}]]}.....-.-.))))))...
 target  UUCAUAUUUG--UUUAUGAUGGCCACAGCCUAAAGUAUC-----CACAGCUGUGACUUGAUUUUAA-G-AAAAUGUUCU
                         ****           ^^^                       ****                  
_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:2     SeB_exonerate category:QUE_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 1e-09
 Query name: gi|987397863|ref|XP_015390790.1| PREDICTED: type I iodothyronine deiodinase isoform X2 [Panthera tigris altaica] >gi|987397865|ref|XP_015390791.1| PREDICTED: type I iodothyronine deiodinase isoform X2 [Panthera tigris altaica]
 Query range: 65-201  (total 201)

 Target: /data/www-rg/seblastian_results/270077212/tempfiles/temptarget.fasta
 Chromosome: QVIC01000022.1: Strand: -
 Positions:
 -Exon 1  58288        58432
 -Exon 2  52879        53078
 -Exon 3  50000        50065

 Redox box: no

Query   GNRPLVLNFGSCTUPSFLFKFDQFKRLIEDFCSIADFLIIYIEEAHASD <---Intron---> GWAFKNNVNIRNHRNLQDRLQAACLLLDRSPQCPV
        |||||||||||||||||||||||||/|||||  |||||||||||||||| <   5209bp   > ||||||||/|/ |/|||||| || /|| /||||||
Target  GNRPLVLNFGSCTUPSFLFKFDQFKKLIEDFSPIADFLIIYIEEAHASD                GWAFKNNVDIKIHQNLQDRLWAAHMLLAKSPQCPV
        gaaccgcatgatatcttctatgctaacaggtacaggtcaatagggcgtg                gtgtaaaggaaaccaccgcctggcaccgaacctcg
        gagctttatgggcgcctttataataattaatgctcattttataacacc                aggctaaatatataaataagtgccatttcagcagct
        ccaagggttatccatattcatcacgattacttcaattcccctaaataa                tcgttgttgccgttgccgccagaccgggcgtcgctg
                     *                                                                                      

Query   VVDTMKNQSSRLYAALPERLYVLQAGKILYK <---Intron---> GKPGPWNYHPEEVRAVLEKLHS
        |||||/||||/||||||||||/|| |/|||| <   2813bp   > ||||||||||||||||||||||
Target  VVDTMQNQSSQLYAALPERLYILQEGRILYK                GKPGPWNYHPEEVRAVLEKLHS
        gggaacacaacctggccgactaccggaacta                gacgctatccgggcggcgacca
        ttactaaaggatacctcagtattaaggttaa                gacgcgaaacaatgcttaatag
        ggccggcgccgccacgcggccacggcgcccg                tatctgcctagattttgagcct
                                                                             
 Sequence until next stop: 
TAA
 * 

 Distance CDS-SECIS: 2886 ; UGA-SECIS: 3255

------- SECIS element -- id:2 -- grade:B ----
 Chromosome = QVIC01000022.1: Strand = - Positions = 47113 - 47034
 Found by:  Infernal (score=11.11) Covels (score=3.66)
 Stem2 length = 9   Apical loop length = 18   Insertion in stem2 = 0, 0
 Free Energy = -5.96

         ..(((((((.......(((((((((((((((................)))))))))))))))..........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcC-cuuuuuggggcgggccaggcCuGAUGuu-u-uuucaugaccggc
         .(((([{[(.......([[(((([(({(((..................)))}))]))))]])......-...)]}])))).
 target  CACAGGCAUGAGUUUGUGAAGUUAUACUGAGAACAAGUAGCUGUGACAUCAAUGGGACUGAAGCAGAA-CUGAGCACUGUC
                         ****           ^^                         ****