------- SECIS element -- id:1 -- grade:A ---- Chromosome = QVIC01000223.1: Strand = + Positions = 53238 - 53320 Found by: Infernal (score=25.28) Covels (score=30.9) Stem2 length = 11 Apical loop length = 13 Insertion in stem2 = 0, 0 Free Energy = -26.17 ..(((((((.........(((((((((((((((...............)))))))))))))))..............))))))).. model uucggucaugcg--UuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuu-----u-uuucaugaccggc ..(((([(((........([[((((((((((((.....--........))))))))))))]])..........-..)))])))).. target UCAGGGAUGGCGUCUCUAUGAGGGAGGGGCCCGAAGCC--CUUGUGGGCGGGCCUCUUCUGAGCCUGCCCAAG-GUCCAGCCUUUA **** ^^ **** ------- SECIS element -- id:2 -- grade:B ---- Chromosome = QVIC01000223.1: Strand = + Positions = 59759 - 59803 Found by: Infernal (score=10.7) Stem2 length = 9 Apical loop length = 20 Insertion in stem2 = 0, 1 Free Energy = -9.65 ..(((((((.......(((((((((((((((................))))))).))))))))........))))))).. model uccgggcaugcgUuaAUGAcGgccuggcccuAAAcC-cuuuuuggggcgggcca-ggcCuGAUGuuuuuucaugcccggc -----------------[[((((((((((....................))))).)))))]]------------------ target -----------------GAUGGCUAAGUCAUAAAGGUGGCAGAAGAGUGGACUUAAGCCAGA------------------ *** ^^^ ***