_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 0.0
 Query name: gi|984110673|ref|XP_015346784.1| PREDICTED: selenide, water dikinase 2 [Marmota marmota marmota]
 Query range: 1-450  (total 450)

 Target: /data/www-rg/seblastian_results/125907849/tempfiles/temptarget.fasta
 Chromosome: QVIC01000230.1:NubNeq(3037899,101238) Strand: +
 Positions:
 -Exon 1  49919        51268

 Redox box: no

Query   MAETAVGACGEAMAALVTAEGASGPAGMSLGRGFSSYRPFDPQTLGFSPSWRLTGFSGMKGUGCKVPQETLLKLLAGLSRPDMRPQPGSGLVGGQEEAAQ
        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||/|||||||||||||||||
Target  MAETAVGACGEAMAALVTAEGASGPAGMSLGRGFSSYRPFDPQTLGFSPSWRLTGFSGMKGUGCKVPQETLLXLLAGLSRPDVRPQPGSGLVGGQEEAAQ
        aggaggggtgggaggtgaggggtgcggatcgcgttatcctgccatgtacatccagttgaagtgtagccgaccaccggctccggccccgtgcgggcggggc
        tcacctgcggactccttccagccgccgtctgggtcgagctacactgtgcgggtcgtcgtaggggatcaacttattcgtcgcatgcacgcgttggaaacca
        gggcggaccaaggggggcgaccgcggcgtccgccgccgcctcgggcccgcgggctcccggcaccgccggggcncggagaggcggcggcccgtacgaggcg
                                                                     *                                      

Query   EAGLTSGTGPSPTFPFLSIGMDSCVIPLRHGGLSLVQTTDFFYPLVEDPYMMGRIACANVLSDLYAMGITECDNMLMLLSVSQSMNEEEREKVTPLMVKG
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Target  EAGLTSGTGPSPTFPFLSIGMDSCVIPLRHGGLSLVQTTDFFYPLVEDPYMMGRIACANVLSDLYAMGITECDNMLMLLSVSQSMNEEEREKVTPLMVKG
        gggcatgagcacatcttaagagttgaccacggctcgcaagtttctgggctaagcagtgagcagctgagaagtgaatatcagacaaagggcgagaccagag
        acgtccgcgcgcctcttgtgtacgttctgaggtcttaccattacttaacattggtcgcattgatactgtcagaatttttgtgagtaaaagaatcctttag
        atcgctgacccattacgttggccccccggcacaagggcgctcccggatgcgggaattatggtccccgcttatccgagactccgtgtggaaagaaacgtac
                                                                                                            

Query   FRDAAEEGGTAVTGGQTVVNPWIIIGGVATVVCQPNEFIMPDNAVVGDVLVLTKPLGTQVAANAHQWLDNPERWNKIKMVVSREEVELAYQEAMFNMATL
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Target  FRDAAEEGGTAVTGGQTVVNPWIIIGGVATVVCQPNEFIMPDNAVVGDVLVLTKPLGTQVAANAHQWLDNPERWNKIKMVVSREEVELAYQEAMFNMATL
        tcgggggggaggaggcaggactaaaggggaggtccagtaacgaggggggcgtaactgacgggagcctcgacgataaaaaggtaggggcgtcggataagac
        tgaccaaggcctcggacttacgtttggtccttgacaatttcaacttgattttcactgcatccacaagtaacaggaatatttcgaatatcaaacttatcct
        tgtttggactagataaagcctgtccgatctgatgatacagtctatagtgcgacacactgcctttcaggtttaagtgaaggccaagaggttgatgctgtca
                                                                                                            

Query   NRTAAGLMHTFNAHAATDITGFGILGHSQNLAKQQRNEVSFVIHNLPIIAKMAAISKASGRFGLLQGTSAETSGGLLICLPREQAARFCSEIKSSKYGEG
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Target  NRTAAGLMHTFNAHAATDITGFGILGHSQNLAKQQRNEVSFVIHNLPIIAKMAAISKASGRFGLLQGTSAETSGGLLICLPREQAARFCSEIKSSKYGEG
        aaagggtacatagcggagaagtgatgctcacgaccaaggttgacaccaagaaggaaagagctgcccgatggatggtcatccagcggctttgaattatggg
        agcccgttactacacccatcgtgttgacaatcaaagaatctttaatcttcatcctgacgggtgttagcccaccggtttgtcgaaccgtgcataccaagag
        tattcaagccttctacctcactctaactgccaaaaatggctctttggctcggtcccgctgataataatgtactgaaattgaaagatatcaaaatcgcagt
                                                                                                            

Query   HQAWIVGIVEKGNRTARIIDKPRVIEVLPRGATAAALAPDNSNASSEPSS
        ||||||||||||||||||||||||||||||||||||||||||||||||||
Target  HQAWIVGIVEKGNRTARIIDKPRVIEVLPRGATAAALAPDNSNASSEPSS
        ccgtaggaggagacagcaagaccgaggcccggagggcgcgatagttgcat
        aacgttgttaagagccgttaacgttattcggccccctccaacacccacgc
        caagccccgagacaactcccgtattgtattgctttttttttccccagtcc
                                                          
 Sequence until next stop: 
TGA
 * 

 Distance CDS-SECIS: 554 ; UGA-SECIS: 1718

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = QVIC01000230.1:NubNeq(3037899,101238) Strand = + Positions = 51823 - 51899
 Found by:  Infernal (score=30.13) Covels (score=17.34)
 Stem2 length = 9   Apical loop length = 19   Insertion in stem2 = 1, 0
 Free Energy = -16.21

         ..(((((((.......((((((((((.(((((...............)))))))))))))))..........)))))))..
 model   uucggucaugcgUuaAUGAcGgccug-gcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuu-u-uuucaugaccggc
         ((((((((((--....([[((((((((.((...................))))))))))]])......-.-))))))))))
 target  UUGGUCUCUG--UUAAUGAUGUCUUUCCUUCUAAAUUCCACUAAGGAUUGGGAAAGGCAGAGCAAGCC-C-UAGAGACCAG
                         ****            ^^^                       ****