_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 1e-45
 Query name: gi|914897838|ref|XP_005343001.2| PREDICTED: selenoprotein N [Ictidomys tridecemlineatus]
 Query range: 7-418  (total 418)

 Target: /data/www-rg/seblastian_results/7502249/tempfiles/temptarget.fasta
 Chromosome: QVIC01000093.1: Strand: -
 Positions:
 -Exon 1  62137        62305
 -Exon 2  58945        59094
 -Exon 3  55320        55476
 -Exon 4  53847        53928
 -Exon 5  53511        53699
 -Exon 6  53090        53195
 -Exon 7  51973        52085
 -Exon 8  51787        51888
 -Exon 9  50000        50167

 Redox box: no

Query   GDGAYNWGSAQCLPPQQESALKALGTEGLFLFSSLDTDGDMYISPEEFKPIAEKLTG <---Intron---> STPAASYEEEELIPDPTEETLTIEARF
        |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| <   3042bp   > ||||||||||/||||||||||||||||
Target  GDGASNWGSAQCLPPQQESALKALGTEGLFLFSSLDTDGDMYISPEEFKPIAEKLTG                STPAASYEEEQLIPDPTEETLTIEARF
        ggggtatgtgctcccccgtgcagcgaggctctttcgagggataacggtacaggacag                tacggatgggccacgcaggacaaggct
        gagccaggccagtccaaacctactgcagttttcctacagatatgcaatactcaatc                gcccccgaaaaattcaccaactctacgt
        atgatcgcacgcttcgggaagacggaacctctncgcttgtgccccggcacttagga                gactccccgggggctccggggccaacac
                                                                                                            

Query   QPLLPETMTKSKDGFLGVSRDTG <---Intron---> ESVPHRIHAEFQLSEPPDFPFWFSPGQFTGHIILSKDATHVRDFRLFVPNHR <---Intr
        ||||||||||||||||||||||  <   3468bp   > |||||||||||||||||||||||||||||||||||||||||||||||||||| <   1391
Target  QPLLPETMTKSKDGFLGVSRDTA                ESVPHRIHAEFQLSEPPDFPFWFSPGQFTGHIILSKDATHVRDFRLFVPNHR         
        cccccgaaaaaaggtcggacgag                gtgccaacggtccagccgtcttttcgctagcaactaggacgcgtcctgcaca         
        acttcactcagaagttgtggac                cactcagtacatatgaccatctgtccgatcgatttcaaccatgatgtttcaag         
        gtgcagcgcgcatgcaggtgct                agttccgctcgcgccgtaccccgccacgctcccccgatcctctccgccgctc          
                                                                                                            

Query   on---> SLNVDMEWLYGASEGSSMEVDIGYVPQ <---Intron---> MELEAMGPSVPSVILDEDGNVIDSRQPSGEPLQFVFEEIRWQQELSWEEA
        bp   > ||||||||||||||||||||||||||| <   147bp    > ||||||||||||||||||||||||||||||||||||||||||||||||||
Target         SLNVDMEWLYGASEGSSMEVDIGYVPQ                MELEAMGPSVPSVILDEDGNVIDSRQPSGEPLQFVFEEIRWQQELSWEEA
               ttaggagtctggaggaaagggagtgcc                agcggagctgctgacggggagagaccctggccctgtggaatccgcatggg
               ctatatagtagcgagggtatatgatca                tatactgcctcctttaaagattaggaccgactatttaatggaaatggaac
              gtgtgcggggcgccgcccgggctccacg                ggtacgccagcggcgtgtccgtcccgcaggccatgtggcggggggcgggc
                                                                                                            

Query   ARHLEVAMYPFKK <---Intron---> VTYLPFTEAFDRAKAENKLVHSILLWGALDDQSCUG <---Intron---> SGRTLRETVLESSPILALL
        ||||||||||||| <   315bp    > |||||||||||||||||||||||||||||||||||| <   1004bp   > |||||||||||||||||||
Target  ARHLEVAMYPFKK                VTYLPFTEAFDRAKAENKLVHSILLWGALDDQSCUG                SGRTLRETVLESSPILALL
        gcccgggatctaa                gatcctaggtgcgaggaacgctacctggcggctttg                tgcaccgagcgatcacgcc
        cgatatctactaa                tcatctcactagcacaaattactttggctaaacgg                gcggctgacttagccttctt
        cgtaggcgcccgg                cccggccgctcacgtgcgggcacttggcgtcgcca                tgggtcgatcgatgcctacc
                                                                       *                                    

Query   NESFISTWSLVKELEDLQ <---Intron---> SNQENPSHRQLAGLHLEKYSFPVEMMICLPNGTV <---Intron---> VHHINANYFLDITSMK
        |||||/|||||||||||| <    84bp    > |||||||||||||||||||||||||||||||||| <   1619bp   > ||||||||||||||||
Target  NESFINTWSLVKELEDLQ                SNQENPSHRQLAGLHLEKYSFPVEMMICLPNGTV                VHHINANYFLDITSMK
        agataaattcgagcggcc                aacgactcaccggcccgatatcggaaatccagag                gccaagattcgaataa
        aagttacgcttaataata                gaaaaccagatcgtataaagtctatttgtcagct                taatacaattatccta
        tgcccccgcggggcacgg                ccggcgccgggtcgcggacccgggggccgccctg                cccctccccgccccgg
                                                                                                            

Query   PEDVENNVFSFSSTFEDPSTATYMQFLKEGLRRGLPHLHP
        ||||||||||||||||||||||||||||||||||||||||
Target  PEDVENNVFSFSSTFEDPSTATYMQFLKEGLRRGLPHLHP
        cggggaagtatttatggctagatacttaggcacgcccccc
        caataaattgtccctaacccccatattaagtgggtcatac
        tgcggctccccccctacgtgcccggcaggacgccgcctcc
                                                
 Sequence until next stop: 
TAG
 * 

 Distance CDS-SECIS: 1094 ; UGA-SECIS: 1478

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = QVIC01000093.1: Strand = - Positions = 48905 - 48835
 Found by:  Infernal (score=34.75) Covels (score=30.3)
 Stem2 length = 10   Apical loop length = 10   Insertion in stem2 = 0, 0
 Free Energy = -16.72

         ..(((((((.......(((((((((((((((...............)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ..(((({((.......{[[{(((((({((((........-----..))))}))))))}]]}..--....))}))))..
 target  CCCAGCAGCCGCCCCAUGACGGCUGGAUCUGAAAUCCUA-----GAUGGACCCAGCUUGAUGU--NUUUGCAGUUGCA
                         ****           ^^^                       ****