------- SECIS element -- id:1 -- grade:A ----
 Chromosome = QVIC01000009.1: Strand = + Positions = 63101 - 63173
 Found by:  Infernal (score=21.98) Covels (score=34.87)
 Stem2 length = 10   Apical loop length = 18   Insertion in stem2 = 0, 0
 Free Energy = -18.47

         ..(((((((.......(((((((((((((((................)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcC-cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         (({((((((---....{[[(((((((((((..................)))))))))))]]}..--..-.))))))}))
 target  ACCAGUGUG---CGAAUGAUAACUACUGACGAAAGAGUCCUUGACUCAGUUAGUGGUUGGAUGU--GG-UCACAUUAGU
                         ****           ^^^                        ****                 

------- SECIS element -- id:2 -- grade:B ----
 Chromosome = QVIC01000009.1: Strand = - Positions = 91487 - 91410
 Found by:  Infernal (score=15.75) Covels (score=8.59)
 Stem2 length = 9   Apical loop length = 18   Insertion in stem2 = 0, 0
 Free Energy = -4.81

         ..(((((((.......(((((((((((((((................)))))))))))))))..........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcC-cuuuuuggggcgggccaggcCuGAUGuu-u-uuucaugaccggc
         .([((((((.--....([[[(([(({((((..................))))}))]))]]])......-...))))))]).
 target  CAGGUAGAGA--GACAUGAAGAACACCUAAUCAAAGUCAGAUAUUUGCUUAGUUGGUUGGAGGCAUUU-UCCUUCUACAUA
                         ****            ^^^                       ****                   

------- SECIS element -- id:3 -- grade:B ----
 Chromosome = QVIC01000009.1: Strand = + Positions = 29505 - 29588
 Found by:  Infernal (score=14.45) Covels (score=8.71)
 Stem2 length = 10   Apical loop length = 17   Insertion in stem2 = 1, 0
 Free Energy = -11.68

         ..(((((((..........((((((((((.(((((...............)))))))))))))))...........)))))))..
 model   uucggucaugcg---UuaAUGAcGgccug-gcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuu--u-uuucaugaccggc
         ((({(((((..........([[(((((((.((((.................)))))))))))]]).......-...)))))})))
 target  UUUCUUGGUAAAAGCUGCAUGAAUAACUUUCUUGCCAGGCACUUAGUGGUACAAGGAGUUGUGAGAUAUGUU-GGGACCAAUAAG
                            ****           ^^                         ****