------- SECIS element -- id:1 -- grade:A ----
 Chromosome = QVIC01000157.1:NubNeq(3565266,100187) Strand = - Positions = 98642 - 98572
 Found by:  Infernal (score=15.81) Covels (score=16.47)
 Stem2 length = 9   Apical loop length = 16   Insertion in stem2 = 0, 1
 Free Energy = -15.49

         ..(((((((.......(((((((((((((((...............))))))))).))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccagg-cCuGAUGuuuuuucaugaccggc
         ((({(({((---(...([[{(((({(((((......-..........)))))})).))}]])----...)))}))})))
 target  CUCAGCAAC---UUAAUGAAACCCUGUCUCAAAAAA-UAAAAAAAAGGGGACUGGGGUAGAG----CUCAGUAGUAGAG
                         ****          ^^^                         ****                 

------- SECIS element -- id:2 -- grade:B ----
 Chromosome = QVIC01000157.1:NubNeq(3565266,100187) Strand = + Positions = 64826 - 64898
 Found by:  Infernal (score=12.24) Covels (score=10.34)
 Stem2 length = 9   Apical loop length = 13   Insertion in stem2 = 0, 1
 Free Energy = -4.72

         ..(((((((.......(((((((((((((((...............))))).))))))))))..........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggc-caggcCuGAUGuu-u-uuucaugaccggc
         ((((({({(---(...{[[{{(((((-((((.....--........))))-.)))))}}]]}......-..))})})))))
 target  CUUAGUCCC---UGAAUGACAAUAGU-AUUGAAAUU--AAGGCAAGUAAU-AACUGUAUGAUGAUGCC-UAAGUGUCUAAG
                         ****           ^^^                        ****                   

------- SECIS element -- id:3 -- grade:B ----
 Chromosome = QVIC01000157.1:NubNeq(3565266,100187) Strand = - Positions = 86192 - 86113
 Found by:  Infernal (score=10.12) Covels (score=4.33)
 Stem2 length = 7   Apical loop length = 18   Insertion in stem2 = 0, 0
 Free Energy = -8.36

         ..(((((((.......(((((((((((((((................))))))))))))))).............)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcC-cuuuuuggggcgggccaggcCuGAUGuu----u-uuucaugaccggc
         (({((((((---....([[(({({[({(((..................)))})]})}))]]).........-...))))))}))
 target  UGGAGCCUG---AGAAUGAAGCACAUUGCACAAACUAUUCCCAUCACCUGCUGGCUUCUGAGGUACCAGGG-AAGCAGGCUGUG
                         ****           ^^^                        ****