_________________________________.______________________._________________________________________________________________________________ _|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| | knownSP | secis_index:1 SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_ _________________________________|______________________|_________________________________________________________________________________ Blastx evalue: 2e-75 Query name: gi|984102777|ref|XP_015342689.1| PREDICTED: glutathione peroxidase 1 [Marmota marmota marmota] Query range: 1-202 (total 202) Target: /data/www-rg/seblastian_results/340324213/tempfiles/temptarget.fasta Chromosome: QVIC01000027.1: Strand: + Positions: -Exon 1 49964 50212 -Exon 2 50442 50798 Redox box: no Query MCATRLATMAAQSTVYTFSARPLAGGEPLSLGSLRGKVLLIENVASLUGTTLRDYTQMNELQERLGPRGLVVLGFPCNQFGHQ <---Intron---> E /||||||||||||||||||||||||||||/||||||||||||||||||||||||||||||||/|||||||||||||||||||| < 229bp > | Target VCATRLATMAAQSTVYTFSARPLAGGEPLNLGSLRGKVLLIENVASLUGTTLRDYTQMNELQKRLGPRGLVVLGFPCNQFGHQ E gtgaacgaaggctagtattgcccggggctacgtccgagccagaggtctgaaccgtacaagccaccgccgtggcgtctactgcc g tgccgtcctccacctactccgctcggactatgctggattttaatcctggcctgaacataataagtgcggttttgtcgaatgaa a gtctgggaggcgcagccccgcggtcggtgtgctggcgggccgtgtttaccgtgcccagcgaggccgcgcgcgcccgccgtatg g * Query NAKNEEILNSLKYVRPGGGFEPNFPLFEKCEVNGSKAHPLFAFLREALPMPSDDPSALMTDPKFIIWSPVCRNDIAWNFEKFLVGPDGVPVRRYSRRFPT |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Target NAKNEEILNSLKYVRPGGGFEPNFPLFEKCEVNGSKAHPLFAFLREALPMPSDDPSTLMTDPKFIIWSPVCRNDIAWNFEKFLVGPDGVPVRRYSRRFPT agaaggacatcatgccgggtgcatcctgatggagtagccctgtccggccacaggcaacaagcataattcgtcagagtatgatcggcgggcgcatacctca acaaaattactaatgcgggtacatcttaagatagcacacttcttgactctcgaacgcttcacatttgcctggaatcgataatttgcagtctggagggtcc cggcagtgtccgccactcgcgctccccggcggtccgataccacgggcgagcctcctacgcccacccgtggcctttcgctggcggctctgggcacccctgc Query IDIEPDIEALLSQMPSSA ||||||||||||||||/| Target IDIEPDIEALLSQMPSNA agagcgaggcctcacaag tatacatacttcatcgac ccaatctacggtggcctc Sequence until next stop: TAG * Distance CDS-SECIS: 46 ; UGA-SECIS: 508 ------- SECIS element -- id:1 -- grade:A ---- Chromosome = QVIC01000027.1: Strand = + Positions = 50845 - 50919 Found by: Infernal (score=28.65) Covels (score=20.88) Stem2 length = 10 Apical loop length = 12 Insertion in stem2 = 1, 0 Free Energy = -19.04 ..(((((((.......((((((((((.(((((...............)))))))))))))))..........))))))).. model uucggucaugcgUuaAUGAcGgccug-gcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuu-u-uuucaugaccggc ((((((((((......{[[{((((((.[(((.........-----...)))]))))))}]]}......-..)))))))))) target GUGGGGAUUUCAUCCAUGAUGGUGUUUACUCUAAACCUGC-----AUUGAGGAACGCCUGAUUUCCGG-GAAAAUCCCCAU **** ^^^ ****