_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 1e-30
 Query name: gi|984109996|ref|XP_015346430.1| PREDICTED: methionine-R-sulfoxide reductase B1 [Marmota marmota marmota]
 Query range: 1-116  (total 116)

 Target: /data/www-rg/seblastian_results/58908084/tempfiles/temptarget.fasta
 Chromosome: QVIC01000038.1:NubNeq(2866500,100593) Strand: -
 Positions:
 -Exon 1  51957        52011
 -Exon 2  50441        50589
 -Exon 3  50020        50134
 -Exon 4  48888        48916

 Redox box: no

Query   MSFCSFFGNEVFQNHFEPG <---Intron---> IYVCAKCGYELFSSHAKYAHSSPWPAFTETIHADSVAKRAEHNRPQALK <---Intron---> 
        |||||||||| |||||/|| <   1367bp   > ||||||||||||||||||||||||||||||||||||||||||||||||| <   306bp    > 
Target  MSFCSFFGNEAFQNHFQPG                IYVCAKCGYELFSSHAKYAHSSPWPAFTETIHADSVAKRAEHNRPQALK                
        atttattgaggtcactccg                atgtgatgtgcttacgatgcttctcgtagaacggaggacggcacccgca                
        tctggttgaactaaatac                gtatgcaggaattcgacaacacccgcctcactacagtcagcaaagcacta                
        ggcccccgcgtcgcctga                cctgtcgtctgcccctggcacacagaactgccctctgcgtggctatgcgg                
                                                                                                            

Query   VSCGRCGNGLGHEFLNDGPKPGQSRFUIFSSSMKFIPKG <---Intron---> KESAASEGH
        ||||||||||||||||||||||||||||||||/|||||| <   1103bp   > |||||||||
Target  VSCGRCGNGLGHEFLNDGPKPGQSRFUIFSSSLKFIPKG                KESAASEGH
        gttgatgagcgcgtcaggcacgctattataatcatacag                agaggtggc
        tcgggggagtgaattaagcacgacgtgttggctattca                gaagcccaga
        gctcatcttgctacgctccgtgacacaatccgggccta                caattccggc
                                  *                                     
 Sequence until next stop: 
TAG
 * 

 Distance CDS-SECIS: 449 ; UGA-SECIS: 512

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = QVIC01000038.1:NubNeq(2866500,100593) Strand = - Positions = 48438 - 48367
 Found by:  Infernal (score=27.58) Covels (score=22.07)
 Stem2 length = 9   Apical loop length = 19   Insertion in stem2 = 0, 0
 Free Energy = -16.21

         ..(((((((.......(((((((((((((((...............)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ...((({((---....{[[{(((((((((...................)))))))))}]]}..--..-.))})))...
 target  CCUGGUGAC---UCUAUGAUCUGCUCUGGUAAAAGCCUUCUAAGCCAUCCAGGGUGGUGAUGA--UU-UGUGACCCAC
                         ****          ^^^                        ****