ABSTRACT MATERIALS AND METHODS RESULTS DISCUSSION CONCLUSIONS ACKNOWLEDGMENTS REFERENCES CONTACT



RESULTS


The protein exists in Neophocaena asiaeorientalis File available
The protein does not exist in Neophocaena asiaeorientalis File not available


Protein Scaffold Gene location Tblastn Exons T-coffee SECIS info SECIS Seblastian Predicted protein
Sel15 KZ688413.1 11431-51756
Glutathione peroxidase family
GPx1 KZ686378.1 785042-785884
GPx2 KZ687437.1 914268-917392
GPx3 KZ686489.1 205068-206355
GPx4 KZ686867.1 2035805-2036866
GPx5 KZ686378.1 519485-526293
GPx6 KZ688217.1 494754-526290
GPx7 KZ686824.1 5154138-5160331
GPx8 KZ688285.1 7740822-7745085
Iodothyronine deiodinase family
DI1 KZ686824.1 6378358-6389984
DI2 KZ686724.1 109076-118197
DI3 KZ686590.1 7598239-7599036
MsrA KZ687250.1 784273-1157523
SelH KZ687389.1 11572076-11572598
SelI KZ688256.1 1939120-1976312
SelK KZ687235.1 2446417-2448040
SelM KZ688414.1 1871838-1874036
SelN KZ688383.1 3964000-3977109
SelO KZ686720.1 479701-499361
SelP KZ686890.1 1533823-1538970
Selenoprotein R family
SelR1 KZ687977.1 1695603-1697931
SelR2 KZ686645.1 3712242-3724509
SelR3 KZ686645.1 16747508-16853237
SelS KZ688257.1 169717-177377
SelT KZ687677.1 57301-57885
Selenoprotein U family
SelU1 KZ686884.1 2812631-2822284
SelU2 KZ688101.1 340620-350879
SelU3 KZ688031.1 2725804-2727629
SelV - -
Selenoprotein W family
SelW1 KZ688431.1 3253694-3253768
SelW2 KZ686466.1 2167618-2168518
Thioredoxin reductase family
TR1 KZ688579.1 3576884-3623111
TR2 KZ688579.1 6256779-6283812
TR3 KZ688579.1 2969431-2997701


Selenoproteins machinery


Protein Scaffold Gene location Tblastn Exons T-coffee SECIS info SECIS Seblastian Predicted protein
eEFsec KZ688166.1 1849532-1936606
PSTK KZ687414.1 1390-4718
SBP2 KZ688550.1 960209-997588
SecS KZ687172.1 2503280-2537885
SEPHS1 KZ687148.1 1525204-1526403
SECp43 KZ688383.1 6138844-6159934
SPS1 KZ686361.1 1370782-1392133
SPS2 KZ687148.1 1365930-1392109


Phylogenetic tree


Figure 7. Phylogenetic tree comparing the selenoproteosome of Homo sapiens with the the selenoproteosome of Neophocaena asiaeorientalis

This is the phylogenetic tree obtained using the program Phylogeny.fr. which compares the homology of the selenoprotein of Homo sapiens with the Neophocaena asiaeorientalis ones. In this image we can observe that the different families of selenoproteins, such as the GPxs family, are found in clusters. Considering the homology between the two species, proteins in Homo sapiens are indeed phylogenetically close with the proteins predicted. In some particular cases, for example in PSTK or SelO, the protein predicted is phylogenetically distant from the ones of Homo sapiens.

Universitat Pompeu Fabra
Human Biology