_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 0.0
 Query name: gi|821391692|ref|XP_004286880.2| PREDICTED: selenide, water dikinase 2 [Orcinus orca]
 Query range: 1-451  (total 451)

 Target: /data/www-rg/seblastian_results/450918757/tempfiles/temptarget.fasta
 Chromosome: KZ687148.1:subseq_1475186,101238_ Strand: +
 Positions:
 -Exon 1  49916        51268

 Redox box: no

Query   MAEAAATGAGGEAMAAVAAGEGSSGPTGLPLGRGFSSYRPFEPQALGLSPSWRLTGFSGMKGUGCKVPQETLLKLLAGLTRPEVRPPPGRGLVGGREETA
        |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Target  MAEAAATGAGGEAMAAVAAGEGSSGPIGLPLGRGFSSYRPFEPQALGLSPSWRLTGFSGMKGUGCKVPQETLLKLLAGLTRPEVRPPPGRGLVGGREETA
        agggggaggggggaggggggggttgcagtccgcgttatcctgccgtgcacatccagttgaagtgtagccgaccaccggcaccggccccgcgcgggcggag
        tcaccccgcggactcctccgagccgctgtctgggtcgagctacactgtgcgggtcgtcgtaggggatcaacttattcgtcgcatgcccgggttgggaacc
        ggacgggcccagggggggggaccgcgacgtacgccgccgccgcgggcccgcgggcccccggcaccgcgggggcacggaggggggttggcgcgcactaggc
                                                                      *                                     

Query   QEAGLPVRAEPSPTLPTLGIGMDSCVIPLRHGGLSLVQTTDFFYPLVEDPYMMGRIACANVLSDLYAMGITECDNMLMLLSVSQSMTEEEREKITPLMIK
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Target  QEAGLPVRAEPSPTLPTLGIGMDSCVIPLRHGGLSLVQTTDFFYPLVEDPYMMGRIACANVLSDLYAMGITECDNMLMLLSVSQSMTEEEREKITPLMIK
        cgggccgaggcacatcacgagagttgaccacggctcgcaagtttctgggctaagcagtgagcagctgagaagtgaataccagacaaagggcgaaaccaaa
        aacgtctgcacgcctcctgtgtacgttctgaggtcttaccattacttaacattggtcgcattgatactgtcagaatttttgtgagtcaaagaatccttta
        gaccggtggaccacaagcctggcgccacggcgcgcgggcccctccggatccgggcattccggttcccgcttatccggggccccgtgtggaaagaaacgca
                                                                                                            

Query   GFRDAAEEGGTAVTGGQTVVNPWIIVGGVATVVCQANEFIMPDSAVVGDVLVLTKPLGTQVAVNAHQWLDNPERWTKIKMVVSREEVELAYQEAMFNMAT
        ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |/||||||||||||||||||||||
Target  GFRDAAEEGGTAVTGGQTVVNPWIIVGGVATVVCQPNEFIMPDSAVVGDVLVLTKPLGTQVAVNAHQWLDNPERWNKVKMVVSREEVELAYQEAMFNMAT
        gtcgggggggaggaggcaggactaagggggaggtccagtaacgaggggggcgtaactgacgggagcctcgacgataagaaggtaggggcgtcggataaga
        gtgaccaaggcctcggacttacgtttggtccttgacaatttcagcttgattttcactgcatctacaagtaacaggaatatttcgaatatcaaacttatcc
        ctgttagaagtagttgaggactgtcctatctggtaatacagtcttttgtgtgacacaacattctccaggtttaagtaagggccaagaggctgacgccgtc
                                                                                                            

Query   LNRIAAGLMHTFNAHAATDITGFGILGHSQNLAKQQRNEVSFVIHNLPIIAKMAAISKASGRFGLLQGTSAETSGGLLICLPREQAARFCSEIKSSKYGE
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Target  LNRIAAGLMHTFNAHAATDITGFGILGHSQNLAKQQRNEVSFVIHNLPIIAKMAAISKASGRFGLLQGTSAETSGGLLICLPREQAARFCSEIKSSKYGE
        caaagggtacatagcggagaagtgacgctcacgaccaaggttgacaccaagaaggaaagagctgcccgatggatggtcatccagcggctttgaattatgg
        tagtccgttactacacccatcgtgttgacaatcaaagaatctttaatcttcatcctgacgggtgttagcccaccggtttgtcgaaccgtgcataccaaga
        atatttaagcgttctacatcactctgtccgctaagaatggctctttgactcggtcccgctgccgctaacaaattggagttgaaagatcttgacatagtag
                                                                                                            

Query   GHQAWIVGIVEKGNRTARIIDKPRVIEVLPRGASATALAPENSSTSSEPSL
        |||||||||||||||||||||||||||||||||||||||||||||||||||
Target  GHQAWIVGIVEKGNRTARIIDKPRVIEVLPRGASATALAPENSSTSSEPSL
        gccgtaggaggagacagcaagaccgaggcccggtgagcgcgataattgcat
        gaacgttgttaagagccgttaacgttattcggccccctccaacgcccacgt
        ccacgccctgagacgacgctcgtatcgcgtaacttcttttgtctcctgtcg
                                                           
 Sequence until next stop: 
TGA
 * 

 Distance CDS-SECIS: 568 ; UGA-SECIS: 1732

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = KZ687148.1:subseq_1475186,101238_ Strand = + Positions = 51837 - 51913
 Found by:  Infernal (score=31.12) Covels (score=23.53)
 Stem2 length = 9   Apical loop length = 19   Insertion in stem2 = 1, 0
 Free Energy = -16.81

         ..(((((((.......((((((((((.(((((...............)))))))))))))))..........)))))))..
 model   uucggucaugcgUuaAUGAcGgccug-gcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuu-u-uuucaugaccggc
         (((({(((((--....([[{(((((((.((...................)))))))))}]])......-.-)))))}))))
 target  UUGGUCUCUG--UUAAUGACGUCUCUCCCUCUAAACCCCUUUAAGGACUGGGAGAGGCAGAGCAAGCC-C-CAGAGCCCAG
                         ****            ^^^                       ****