_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:QUE_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 1e-14
 Query name: gi|955484391|ref|XP_004419885.2| PREDICTED: selenoprotein K [Ceratotherium simum simum]
 Query range: 1-94  (total 94)

 Target: /data/www-rg/seblastian_results/636875566/tempfiles/temptarget.fasta
 Chromosome: KZ687235.1:subseq_2396417,101623_ Strand: -
 Positions:
 -Exon 1  54868        54886
 -Exon 2  51517        51607
 -Exon 3  49992        50075
 -Exon 4  49295        49382

 Redox box: no

Query   MVYISNG <---Intron---> QVLDSRSQSPWRLSFITDFFWGIAEFVVLF <---Intron---> FKTLLQQDVKKRRGYGSSSDSRYDDGRG <-
        ||||||| <   3260bp   > |||||||||||||||||||||||||||||| <   1441bp   > |/|| ||||||||||||||||||||||| < 
Target  MVYISNG                QVLDSRSQSPWRLSFITDFFWGIAEFVVLF                FRTLFQQDVKKRRGYGSSSDSRYDDGRG   
        agtatag                cgtgaaactctatttaagtttgaggtggtt                taactccggaaaagtgattgtatgggag   
        ttatca                gattagggaccggtcttcattggtcattttt                tgcttaaataagggaggccacgaaaggg   
        gtctgt                aaggccgtgcagagttagtccgaacgtgtg                tcatgtgatgagaaccacattcatttaa    
                                                                                                            

Query   --Intron---> PPGNPPRRMGRINHLHGPSPPPMAGGUGR
          609bp    > ||||||||||||||| ||/||||||||||
Target               PPGNPPRRMGRINHLRGPNPPPMAGGUGR
                     ccgaccaaagcaacccgcacccagggtga
                     ccgaccggtggtaatggcaccctcggggg
                    gaaaccgaagtatttgtcttttagctaaag
                                               *  
 Sequence until next stop: 
TAA
 * 

 Distance CDS-SECIS: 381 ; UGA-SECIS: 387

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = KZ687235.1:subseq_2396417,101623_ Strand = - Positions = 48913 - 48823
 Found by:  Infernal (score=20.58) Covels (score=25.69)
 Stem2 length = 11   Apical loop length = 20   Insertion in stem2 = 0, 0
 Free Energy = -6.25

         ..(((((((..............(((((((((((((((....................)))))))))))))))..........)))))))..
 model   uucggucaugcg-------UuaAUGAcGgccuggcccuAAAcC-----cuuuuuggggcgggccaggcCuGAUGuu-u-uuucaugaccggc
         ...({((((..............{[[((((((((((((....................))))))))))))]]}......-...))))})...
 target  UGCUCUGUGUCCUCACAGAUGAAUGAGGUUGUGCUGGGAAUUCCCCCCCCCGCAGGGAUCUGGCAUGACUGAUAGGCAG-UUCUAUAAAUGC
                                ****           ^^                             ****