_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 4e-09
 Query name: gi|821102030|ref|XP_012375807.1| PREDICTED: selenoprotein M, partial [Dasypus novemcinctus]
 Query range: 14-125  (total 125)

 Target: /data/www-rg/seblastian_results/838590007/tempfiles/temptarget.fasta
 Chromosome: KZ688414.1:subseq_1821838,102198_ Strand: -
 Positions:
 -Exon 1  50919        50984
 -Exon 2  50679        50713
 -Exon 3  50239        50317
 -Exon 4  50000        50155

 Redox box: YES

Query   PDLLHFVPLQTCGGUQLNRLKE <---Intron---> VKAFVTQDIPFY <---Intron---> HNLVMKHLPGADPELVLLDHRYEELE <---Int
        ||| |||||||||||||||||| <   205bp    > |||||||||| | <   361bp    > ||||||||||||||||||  |/|||| <    83
Target  PDLCHFVPLQTCGGUQLNRLKE                VKAFVTQDIPLY                HNLVMKHLPGADPELVLLGQRFEELE        
        cgctctgcccatggtccaccag                gagtgacgacct                cacgaacccgggcgcgccgcctggcg        
        catgattctacggggatagtaa                tacttcaatcta                aatttaatcgcacattttgagtaata        
        tcactttccgatgaagttcggg                ggccccgccac                cccgagaccggccggcgggcactgagg        
                      *                                                                                     

Query   ron---> RIPLSDMTREEINALVQELGFYRKAAPDAPVPPEYLRAPARPAEGDPDRADL
        bp    > |||||||||||||||||||||||||/||  ||||||||||||||| ||||||
Target          RIPLSDMTREEINALVQELGFYRKASPDEAVPPEYLRAPARPAEGAPDRADL
                caccagaacggaagcgcgcgttcagtcggggccgtccgcgacggggcgcggc
                gtctgatcgaatacttaatgtagacccaactccaatgcccgccagccagcat
                acacccgtcggccgggggcccccgggccgtgcagcgggctgacacttcctcg
                                                                    
 Sequence until next stop: 
TAG
 * 

 Distance CDS-SECIS: 34 ; UGA-SECIS: 325

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = KZ688414.1:subseq_1821838,102198_ Strand = - Positions = 49965 - 49893
 Found by:  Infernal (score=13.98) Covels (score=21.64)
 Stem2 length = 10   Apical loop length = 16   Insertion in stem2 = 0, 0
 Free Energy = -26.19

         ..(((((((.......(((((((((((((((................)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuugggg-cgggccaggcCuGAUGuuuuuucaugaccggc
         ..(((((((---....{[[{(({((((((((................))))))))}))}]]}..--..-.)))))))..
 target  CCUGGGGAC---AGAAUGAAGCGCUCAGCGGCCCGGGAGCACCACCCUCGCUGAGGGCCGACGC--CC-AGUCCCCGAG
                         ****           ^^                         ****