_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:QUE_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 2e-29
 Query name: gi|821398769|ref|XP_012389936.1| PREDICTED: type I iodothyronine deiodinase isoform X3 [Orcinus orca]
 Query range: 1-185  (total 185)

 Target: /data/www-rg/seblastian_results/10200698/tempfiles/temptarget.fasta
 Chromosome: KZ686824.1:subseq_6328358,111626_ Strand: +
 Positions:
 -Exon 1  50000        50144
 -Exon 2  58173        58316
 -Exon 3  61388        61587
 -Exon 4  63385        63450

 Redox box: no

Query   MGLPLPGLWLKRLWVLFQVGLHVAMGKVLLTLFPRRVKQNILAMSEKTG <---Intron---> NRPLVLNFGSCTUPSFIFKFDQFKRLIEDFSSIAD
        ||||||||||||||||||||||||||||||||||||||||||||||||| <   8028bp   > |||||||||||||||||||||||||||/|||||||
Target  MGLPLPGLWLKRLWVLFQVGLHVAMGKVLLTLFPRRVKQNILAMSEKTG                NRPLVLNFGSCTUPSFIFKFDQFKRLIDDFSSIAD
        agccccgctcaactgctcggccggagagccactcaagacaacgaagaag                aaccgcatgatatcttatatgctaacaggtatagg
        tgtctcgtgtagtgtttatgtatctgatttcttcggtaaattctgaac                gagctttatgggcgcctttataatagttaatgctca
        gggcgaggggggcggctggcgcgcgcagtgagtcgacggccgcgtggt                ccgagggttatccatattcgtcacgattctttcaat
                                                                                     *                      

Query   FLIIYIEEAHASD <---Intron---> GWAFKNNVDIKNHQHLQDRLRAARLLLDRSPQCPVVVDTMKNQSSQLYAALPERLYVLQDGRILYK <---
        ||||||||||||| <   3071bp   > |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| <   
Target  FLIIYIEEAHASD                GWAFKNNVDIKNHQHLQDRLRAARLLLDRSPQCPVVVDTMKNQSSQLYAALPERLYVLQDGRILYK     
        tcaatagggcgtg                gtgtaaaggaaacccccgcccggccccgaacctcggggaaaacaacctggccgactgccggaacta     
        ttttataacacc                aggctaaatataaaaataagtgccgtttaggcagctttactaaaggatacctcagtattaaggttaa     
        tcctctaaataa                tcgttgccgccgtcgtcgccggaccgggcgccgccgggcaggcgctgccaggtgggcgcgccgcgcg     
                                                                                                            

Query   Intron---> GKPGPWNYHPEEVRAVLEKLHS
        1797bp   > |||||||| |||||||||||||
Target             GKPGPWNYRPEEVRAVLEKLHS
                   gacgctatccgggcggcgacca
                   gacgcgaagcaatgcttaatag
                   tatctgcctaaattttgagcct
                                         
 Sequence until next stop: 
TAA
 * 

 Distance CDS-SECIS: 882 ; UGA-SECIS: 1251

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = KZ686824.1:subseq_6328358,111626_ Strand = + Positions = 64333 - 64403
 Found by:  Infernal (score=29.22) Covels (score=21.88)
 Stem2 length = 8   Apical loop length = 14   Insertion in stem2 = 0, 0
 Free Energy = -8.56

         ..(((((((.......(((((((((((((((...............))))))))))))))).........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuu-uuucaugaccggc
         ...((((((.--....{[[{(({((((((..........-----....))))))}))}]]}.....-...))))))...
 target  UUCAUAUUUG--UUUAUGACGGCCACAGCCUAAAGUACA-----CACAGCUGUGACUUGAUUUGAA-AGAAAAUGUUUC
                         ****           ^^^                       ****