_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 1e-82
 Query name: gi|821386173|ref|XP_004266005.2| PREDICTED: LOW QUALITY PROTEIN: selenoprotein P [Orcinus orca]
 Query range: 1-379  (total 379)

 Target: /data/www-rg/seblastian_results/936144646/tempfiles/temptarget.fasta
 Chromosome: KZ686890.1:subseq_1483823,105147_ Strand: -
 Positions:
 -Exon 1  54945        55147
 -Exon 2  53992        54204
 -Exon 3  52250        52367
 -Exon 4  49949        50542

 Redox box: YES

Query   MWRGLGLALALCLLPTGGTESQGQSSFCKQPPAWSIKDQDPMLNSYGSVTVVALLQASUYLCILQASR <---Intron---> LEDLRVKLEKEGYSNI
        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| <   740bp    > ||||||||||||||||
Target  MWRGLGLALALCLLPTGGTESQGQSSFCKQPPAWSIKDQDPMLNSYGSVTVVALLQASUYLCILQASR                LEDLRVKLEKEGYSNI
        atagcgcgcgctcccaggagacgcatttacccgtaaagcgcacattgtgagggcccgattctaccgta                tggccgacgaggttaa
        tgggtgtctctgttccggcagagagctgaacccggtaaaacttacagctcttcttacggatgttaccg                taatgtataaagacat
        ggacgggcgtttcccgaaagcgggccttgatacgcagtaccggccttagggttttaccacgcaggat                agacgaaaggaaatgcc
                                                                  *                                         

Query   SYVVVNHQGISSRLSYVHLKNKVSEHIPVYQQEENQTDVWTLLNGNKDDFLIYDR <---Intron---> CGRLVYHLGLPYSFLTFSYVEDSIKSVYC
        ||||||||||||||/|||||||||||||||||||||||||||||| ||||||||| <   1624bp   > |||||||||||||||||||||||||/|||
Target  SYVVVNHQGISSRLNYVHLKNKVSEHIPVYQQEENQTDVWTLLNGKKDDFLIYDR                CGRLVYHLGLPYSFLTFSYVEDSIKTVYC
        ttgggaccgattctatgccaaagtgcacgtccggacaggtactagaaggtcatga                tgccgtccgtctttcatttgggtaaagtt
        catttaaagtccgtaatataaatcaatctaaaaaaacatgcttagaaaatttaag                gggttaatgtcacttctcataactactag
        tttttttaacttaactgttatgtaattttcaaaacaatcgtcatagatcccatc                atcctattttgttccatcataatctgctct
                                                                                                            

Query   ESKCGNCSLK <---Intron---> TLEYEDFCKNVSLATVEKTTEAPQPHHHHHHHHHHHHHHHLENGHLSEYPKPEAPDNPEHPPPSGLHHHHRHRG
        |||||||||| <   1707bp   > ||| ||||||||||| |||||||||   ||||||||||||||| |||||||||||||||| |||||| ||||||
Target  ESKCGNCSLK                TLEDEDFCKNVSLATAEKTTEAPQP---HHHHHHHHHHHHLENSHLSEYPKPEAPDNPEHAPPSGLHRHHRHRG
        gaatgattca                acggggttaagttgaggaaaggccc---cccccccccccccgaacctgtcacggcgacgcgcctgcccccacag
        agaggagcta                ctaaaatgaatctcccaaccaccac---aaaaaaaaaaaataagatcaacacaccaacaaccccgtagaagagg
        atatacctcg                agatacctatatgttaaaacgtagc---tctctctcttcttgctttagtaaaaaatctgtcttatttcctgcgt
                                                                                                            

Query   HQRQGHSENUDALQLSFPQKKLURSGCINQLLUKFPKDSESALSSUXUHCRHLIFEKTGSAVTUQCKDNLPSLCSUQGLLAEEHVTESUQURLPPAACHA
        |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||/||||||||||||||||||||||||||||||||
Target  HQRQGHSENUDALQLSLPQKKLURSGCINQLLUKFPKDSESALSSUCUHCRHLIFEKTGSAVTUQCKENLPSLCSUQGLLAEEHVTESUQURLPPAACHA
        ccacgctgatggtcctcccaactcagtaactctatcagtgtgcaatttctcctatgaagtggatctagacctttatcgccgggcgagttctctccggtcg
        aagagacaagactatctcaaatgggggtaattgatcaacacctgggggaggatttaacgcctcgagaaatcctgggagttcaaatcacgaggtccccgac
        caagtcagcataaatttaaggcaatacatgacaatcataaatgtcacaccatgataaagtaccagtaaccctgtcagctggggcctatagatgtatccca
                 *            *         *            * *               *           *            * *         

Query   SQQLKPTEASTKUSUEKKAEMUKUPSD
        ||||||||||||||||||||||||||/
Target  SQQLKPTEASTKUSUEKKAEMUKUPSN
        acccacaggaaatatgaaggatatcta
        gaataccacgcagggaaacatgagcca
        tggcgtaacccaacaaggaagaaatat
                    * *      * *   
 Sequence until next stop: 
TAA
 * 

 Distance CDS-SECIS: 245 ; UGA-SECIS: 254

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = KZ686890.1:subseq_1483823,105147_ Strand = - Positions = 49703 - 49621
 Found by:  Infernal (score=29.16) Covels (score=32.57)
 Stem2 length = 11   Apical loop length = 14   Insertion in stem2 = 0, 0
 Free Energy = -13.44

         ..(((((((..........(((((((((((((((...............)))))))))))))))............)))))))..
 model   uucggucaugcg---UuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuu---u-uuucaugaccggc
         ..(((((((..........{[[{((((((((([(.....-.........)])))))))))}]]}........-...)))))))..
 target  AGCAUUCUACUUGCAUUCAUGAGAACAGAAACAUAAACU-AUGACCUAGGGGUUUCUGUUGGAUAGUCGGCA-ACUUAGAAUGGA
                            ****           ^^^                       ****