_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 5e-11
 Query name: gi|961759353|ref|XP_014938519.1| PREDICTED: selenoprotein W, partial [Acinonyx jubatus]
 Query range: 27-119  (total 120)

 Target: /data/www-rg/seblastian_results/89275892/tempfiles/temptarget.fasta
 Chromosome: KZ688431.1:subseq_3203694,100074_ Strand: -
 Positions:
 -Exon 1  50412        50489
 -Exon 2  50254        50307
 -Exon 3  50000        50074
 -Exon 4  49819        49893

 Redox box: no

Query   HRFPLSPGTHSLG-PPTSGAUGYKSK <---Intron---> YLQLKKKLEDEFPGCLDI <---Intron---> CGEGTPQATGFFEVMVGGKLVHSK
        || ||||||||||  ||||||||||| <   104bp    > ||||/||||||||| ||| <   179bp    > ||||||| ||||||/| |||||||
Target  HRLPLSPGTHSLGHSPTSGAUGYKSK                YLQLRKKLEDEFPGRLDI                CGEGTPQVTGFFEVLVAGKLVHSK
        ccccctcgactcgctcaaggtgtata                tcccaaatgggtcgccga                tgggaccgagttggtgggatgcta
        agtctccgcactgacccggcggaaca                atatgaataaatcggtat                ggagccatcgttatttcgattaca
        ctctctcgccttactcctctaccgcg                ttgtgggaatgttacgcc                ccgggcgcctctaggaggggtccg
                            *                                                                               

Query   K <---Intron---> RGDGYVDTESKFLKLVAAIKAAMAQ
        | <   106bp    >  |||||||||||||||||||||/||
Target  K                GGDGYVDTESKFLKLVAAIKAALAQ
        a                ggggtggagaatcacgggaaggtgc
        a                ggagatacagattattcctacctca
        g                actccgcggcgtggggtccactgtg
                                                  
 Sequence until next stop: 
GCCTAA
 A  * 

 Distance CDS-SECIS: 1127 ; UGA-SECIS: 1346

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = KZ688431.1:subseq_3203694,100074_ Strand = - Positions = 48691 - 48608
 Found by:  Infernal (score=35.17) Covels (score=34.96)
 Stem2 length = 10   Apical loop length = 18   Insertion in stem2 = 0, 0
 Free Energy = -23.84

         ..(((((((........(((((((((((((((..................)))))))))))))))...........)))))))..
 model   uucggucaugcg-UuaAUGAcGgccuggcccuAAAcC---cuuuuuggggcgggccaggcCuGAUGuu--u-uuucaugaccggc
         ..(((((((........{[[{{((((((((((..................))))))))))}}]]}.......-...)))))))..
 target  UCUCGGCAGACGCUUCAUGACAGGAAGGACUGAAAUGUCUCGUGGACGCCUGGUCCUUCCCUGAUGUUCUCA-CGGCUGCCGGCU
                          ****           ^^^                          ****