_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 4e-10
 Query name: gi|961718760|ref|XP_014919607.1| PREDICTED: LOW QUALITY PROTEIN: ethanolaminephosphotransferase 1 [Acinonyx jubatus]
 Query range: 1-396  (total 396)

 Target: /data/www-rg/seblastian_results/227460014/tempfiles/temptarget.fasta
 Chromosome: KZ688256.1:subseq_1889120,119825_ Strand: -
 Positions:
 -Exon 1  87136        87192
 -Exon 2  69754        69822
 -Exon 3  69174        69282
 -Exon 4  66946        67020
 -Exon 5  61506        61768
 -Exon 6  60470        60578
 -Exon 7  55300        55348
 -Exon 8  53715        53895
 -Exon 9  52318        52500
 -Exon 10 50000        50095

 Redox box: no

Query   MAGYEYVSPEQLAGFDKYK <---Intron---> YSAVDTNPLSLYVMHPFWNTIVK <---Intron---> VFPTWLAPNLITFSGFLLVVFNFLLM
        ||||||||||||||||||| <  17313bp   > ||||||||||||||||||||/|| <   471bp    > ||||||||||||||||||||||||||
Target  MAGYEYVSPEQLAGFDKYK                YSAVDTNPLSLYVMHPFWNTVVK                VFPTWLAPNLITFSGFLLVVFNFLLM
        aggtgtgacgccggtgata                tagggaacctctgaccttaagga                gtcatcgcacaattgtccggtatcca
        tcgaaatgcaatcgtaaaa                agctacactctattactgactta                ttccgtccattctcgttttttatttt
        gttcacgcggggccttgcg                cttgtctgctgtcgtatgccagg                atttggtatgacttctggtgcttgtg
                                                                                                            

Query   AYFDPDFYASA <---Intron---> PGHKHVPDWVWIVVGILNFIAYTLD <---Intron---> GVDGKQARRTNSSTPLGELFDHGLDSWSCVYF
        ||||||||||| <   2153bp   > |||||||||||||||||||/||||| <   5177bp   > ||||||||||||||||||||||||||||||||
Target  AYFDPDFYASA                PGHKHVPDWVWIVVGILNFVAYTLD                GVDGKQARRTNSSTPLGELFDHGLDSWSCVYF
        gttgcgttgtg                cgcacgcgtgtagggacatggtacg                ggggacgcaaataactggctgcgcgatttgtt
        catacatacc                ccgaaatcagtgtttgttattcact                agtagaacggcacgcctgattaagtaggcgtat
        actttcttta                aatcgtattgtgtaacccccaccta                ttgtagactactcccgaggttctcgttgattct
                                                                                                            

Query   VVTVYSIFGRGPSGVSVFVLYLLLWVVLFSFILSHWEKYNTGILFLPWGYDISQV <---Intron---> TISFVYIVTAIVGVEAWYEPFLFNFLYRD
        ||||||||||| |||/|||||||||||||||||||||||||||||||||||/||| <   927bp    > |||||||||||||||||||||||||||||
Target  VVTVYSIFGRGSSGVTVFVLYLLLWVVLFSFILSHWEKYNTGILFLPWGYDVSQV                TISFVYIVTAIVGVEAWYEPFLFNFLYRD
        ggagttatgcgttggagtgctccctggttttactctgataagactcctgtggacg                aattgtagagagggggttgctctatttag
        ttctacttgggccgtcttttatttgttttctttcagaaaacgttttcggaatgat                ctcttattccttgtacgaactttattaga
        tatgtcttaaaagtcttttttcgagatattccgccgagtcagttcgagatctcgg                ttctccagtgtgatgcgtatcgttcatac
                                                                                                            

Query   LFTAMIIG <---Intron---> CALCVTX-XSLLNFFR <---Intron---> SYKNNTLKHNSVYEAMVPFFSPCLLFILSTAWILQSPSDILEIH
        |||||||| <   5121bp   > ||||||   ||||||| <   1404bp   > ||||||||||||||||||||||||||||||||||/|||||||/|
Target  LFTAMIIG                CALCVTLPMSLLNFFR                SYKNNTLKHNSVYEAMVPFFSPCLLFILSTAWILRSPSDILELH
        ctagaaag                tgttgaccaattatta                ataaaatacatgtggagctttcttctattagtacctctgatgtc
        ttccttt                ggctgtctctgttattg                gaaaactaaactaacttcttccgtttttcccgttgcccattata
        actagct                ttaacgttagtaactc                actatccgactactatgtccttatgactgtaagccgatattagat
                                                                                                            

Query   PRLFYFMVGTAFANIT <---Intron---> CQLIVCQMSSTRCPTLNWLLVPLFLVVLVVNLGVASYVESILLYTLTAVFTLAHIHYGVRV <---In
        ||/|| |||||||||| <   1214bp   > |||||||||||||||||| ||||||||/|||/|||||/|||||/|||  |||||||||||| <   22
Target  PRVFYLMVGTAFANIT                CQLIVCQMSSTRCPTLNWFLVPLFLVVIVVNVGVASYIESILLFTLTTAFTLAHIHYGVRV       
        cagtttaggagtgaaa                tccagtcaaaactcatattcgccttggaggaggggttagaacctataagtacgcactggcg       
        cgttatttgcctcatc                gatttgatggcggcctagtttcttttttttatgtccatagttttctccctctcataagtgt       
        taaccagtaactctca                tggtttagctcgcatgtgtgttccgtcagataagctctgctcgtaaattctgcccttaaag       
                                                                                                            

Query   tron---> VKQLSNHFQIYPFSLRKPNSDULGTEEKSIGL
        22bp   > |||||||||||||||||||||||| |||/|||
Target           VKQLSNHFQIYPFSLRKPNSDULGMEEKNIGL
                 gaccaactcatctttaacatgtcgaggaaagc
                 taatgaatatactctgacacagtgtaaaatgt
                 agggccttgtcccaggaacgtaaagaagttcg
                                      *          
 Sequence until next stop: 
TAA
 * 

 Distance CDS-SECIS: 1341 ; UGA-SECIS: 1371

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = KZ688256.1:subseq_1889120,119825_ Strand = - Positions = 48658 - 48581
 Found by:  Infernal (score=24.66) Covels (score=22.43)
 Stem2 length = 10   Apical loop length = 19   Insertion in stem2 = 0, 1
 Free Energy = -5.71

         ..(((((((.......(((((((((((((((.................))))).))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcC--cuuuuuggggcgggc-caggcCuGAUGuuuuuucaugaccggc
         ...(({({((......{[[[((((((((((...................))).)))))))]]]}..--..-))})}))...
 target  GGAGUUUGUGCUUGAAUGAAGAGUGUAUCUUAAACCCUUUUUUUUGGAUGGAUUGCACUUGGAUAA--AA-UAGGCACCAC
                         ****           ^^^                          ****