_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 4e-19
 Query name: gi|821394589|ref|XP_004270367.2| PREDICTED: methionine-R-sulfoxide reductase B1 [Orcinus orca]
 Query range: 1-116  (total 116)

 Target: /data/www-rg/seblastian_results/293396443/tempfiles/temptarget.fasta
 Chromosome: KZ687977.1:subseq_1645603,102328_ Strand: -
 Positions:
 -Exon 1  52274        52328
 -Exon 2  50344        50492
 -Exon 3  49883        49997
 -Exon 4  48921        48949

 Redox box: no

Query   MSFCSFFGGEVFQNHFEPG <---Intron---> IYVCAQCGYELFSSRSKYAHSSPWPAFTETIHADSVAKRPEHNQPGALK <---Intron---> 
        ||||||||||||||||||| <   1781bp   > ||||||||||||||||||||||||||||||||||||||||||||||||| <   346bp    > 
Target  MSFCSFFGGEVFQNHFEPG                IYVCAQCGYELFSSRSKYAHSSPWPAFTETIHADSVAKRPEHNQPGALK                
        atttattggggtcactgcg                atgtgctgtgcttactatgcttctcgtagaacggaggaccgcaccggta                
        tctggttggattaaatac                gtatgcaggaattcggcaacacccgcctcactacagtcagcaaaacgcta                
        ggcccccgcgtcgcctgg                cccgtcatctggtcccagcacacaggcccgccttctgcgtagttgtacag                
                                                                                                            

Query   VSCGRCGNGLGHEFLNDGPKRGQSRFUIFSSSLKFIPKG <---Intron---> KETSASQGQ
        |||||||||||||||||||| |||||||||||||||||| <   933bp    > |||||||||
Target  VSCGRCGNGLGHEFLNDGPKHGQSRFUIFSSSLKFIPKG                KETSASQGQ
        gttgatgagcgcgtcaggcacgctcttataatcatacag                agatgtcgc
        tcgggggagtgaattaagcaagacgtgttggctattca                gaaccccaga
        gctcgtctggctgcgctccgtagcccaacccaggccta                caattccgag
                                  *                                     
 Sequence until next stop: 
TAG
 * 

 Distance CDS-SECIS: 472 ; UGA-SECIS: 535

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = KZ687977.1:subseq_1645603,102328_ Strand = - Positions = 48448 - 48378
 Found by:  Infernal (score=32.89) Covels (score=23.98)
 Stem2 length = 9   Apical loop length = 14   Insertion in stem2 = 0, 0
 Free Energy = -16.64

         ..(((((((.......(((((((((((((((...............)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         .({((((((---....{[[{(({((((({((.....-.........))})))))}))}]]}..--..-.))))))}).
 target  CCUGGUCAC---UCUAUGAUUCUCUCUGACUAAACC-CUUCCAGGCAGCCAGAGUGGUGAUGA--UC-UGUGACCUGC
                         ****           ^^^                       ****