_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 1e-77
 Query name: gi|821381893|ref|XP_004262180.2| PREDICTED: glutathione peroxidase 2 [Orcinus orca]
 Query range: 1-190  (total 190)

 Target: /data/www-rg/seblastian_results/167889118/tempfiles/temptarget.fasta
 Chromosome: KZ687437.1:subseq_864268,103124_ Strand: +
 Positions:
 -Exon 1  50000        50221
 -Exon 2  52777        53124

 Redox box: no

Query   MAYVAKSFYDLSAISLDGEKVDFNTFRGRAVLIENVASLUGTTTRDFTQLNELQCRFPRRLVVLGFPCNQFGHQ <---Intron---> ENCQNEEILN
        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| <   2555bp   > ||||||||||
Target  MAYVAKSFYDLSAISLDGEKVDFNTFRGRAVLIENVASLUGTTTRDFTQLNELQCRFPRRLVVLGFPCNQFGHQ                ENCQNEEILN
        agtggatttgcagaacgggaggtaatcgaggcagaggtctgaaacgtaccagcctctcaccggcgtctactgcc                gatcaggaca
        tcatcactaatgctgtagaatatactgggctttaatcctggcccgatcataataggtcggttttgtcgaatgaa                aagaaaatta
        gtctcgcccccttccacgggatctacacgaggtgcgcgcacaccgcccaccggacctcgcggtgcctccatatg                gctgtggcgc
                                               *                                                            

Query   SLKYVRPGGGFQPTFTLIQKCDVNGQNEHPVFTYLKDKLPYPYDDPFSLMTDPKFIIWSPVHRSDVSWNFEKFLVGPEGEPFRRYSRTFPTINIEPDIKR
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Target  SLKYVRPGGGFQPTFTLIQKCDVNGQNEHPVFTYLKDKLPYPYDDPFSLMTDPKFIIWSPVHRSDVSWNFEKFLVGPEGEPFRRYSRTFPTINIEPDIKR
        acatgccgggtccatacacatggagcagccgtatcagacctctggcttcaagcataatacgcctggttatgatcggcgggctcctacatcaaaagcgaac
        gtaatgcgggtacctcttaagatagaaaacttcataaatcacaaactcttcacatttggctagcatcgataatttgcagactggaggctcctatacatag
        ccgccctgtacgcctctcggctgttgtgttccccggtgccctcccgtccgctcgcctgctgccatgtgctggcccgagggccaccccccgccccgtccgc
                                                                                                            

Query   LLKVAI
        ||||||
Target  LLKVAI
        ccagga
        ttatct
        ccatca
              
 Sequence until next stop: 
TAA
 * 

 Distance CDS-SECIS: 214 ; UGA-SECIS: 664

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = KZ687437.1:subseq_864268,103124_ Strand = + Positions = 53339 - 53403
 Found by:  Infernal (score=33.45) Covels (score=30.01)
 Stem2 length = 10   Apical loop length = 11   Insertion in stem2 = 0, 0
 Free Energy = -29.0

         ..(((((((.......(((((((((((((((...............)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         .((((((((---(...([[{((((((((((......-..-----...))))))))))}]])----...))))))))).
 target  AGCCUUCAC---AGAAUGAUGGCACCUUCCUAAAUC-UG-----UAUGGGAGGUGUCUGAG----AAGUGUGAGGGUC
                         ****           ^^^                       ****