_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 5e-24
 Query name: gi|821411697|ref|XP_004280386.2| PREDICTED: glutathione peroxidase 3 [Orcinus orca]
 Query range: 1-225  (total 226)

 Target: /data/www-rg/seblastian_results/29846908/tempfiles/temptarget.fasta
 Chromosome: KZ686489.1:subseq_155068,101287_ Strand: +
 Positions:
 -Exon 1  44523        44609
 -Exon 2  48937        49090
 -Exon 3  50001        50118
 -Exon 4  50552        50651
 -Exon 5  51075        51290

 Redox box: no

Query   MARLFRASCLLSLLLAGFVPPSRGQEKSM <---Intron---> MDCHAGVGSSIYEYGALAIDGQEYIPFKQYAGKYLLFVNVASYUGLTSQYLE <-
        ||||||||||||||||||||||||||||  <   4327bp   > ||||||||||||||||| |||/|||||||| |||/||||||||||||||||| < 
Target  MARLFRASCLLSLLLAGFVPPSRGQEKSK                MDCHAGVGSSIYEYGALTIDGEEYIPFKQYTGKYILFVNVASYUGLTSQYLE   
        agcctcgttcctcccggtgccacgcgata                agtcggggaaatgtggcaaggggtactactagatactgaggattgcaactcg   
        tcgttgccgttctttcgttccgggaaaca                tagacgtgggtaaagctctagaaatctaaacgaattttatcgaggtcgaat    
        gcgccgacctccgcgccctggcaaggggg                gccttggcccctgtacccccgggccccggctcaccctccgcccacggcgct    
                                                                                                *           

Query   --Intron---> LNALQEELAPFGLVILGFPCNQFGKQEPGMNSEILPTLK <---Intron---> YVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFL
          910bp    > ||||||||||||||||||||||||||||||||||| ||| <   433bp    > ||||||||||||||||||||||||||||||||
Target               LNALQEELAPFGLVILGFPCNQFGKQEPGMNSEILATLK                YVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFL
                     cagccggcgctgcgacgtctactgacgcgaatgacgaca                tgccgggtgcatcctgagggaggagcattatc
                    atactaaatcctgttttgtcgaatgaaacgtacattccta                atgcgggttcatattaagatagaaaaatactt
                    agtaagaataattgctgcccccacaagaaagcggcactc                gtcaatgcccctcgctgagtgcggaaggccacg
                                                                                                            

Query   K <---Intron---> NSCPPTSELLGSPDRLFWDPMKVHDIRWNFEKFLVGPDGVPIMRWHHRTTVNTVKMDILTYMRRRATLEARG
        | <   423bp    > ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||/|
Target  K                NSCPPTSELLGSPDRLFWDPMKVHDIRWNFEKFLVGPDGAPIMRWHHRTTVNTVKMDILTYMRRRATLEAKG
        a                attccatgccgtcgccttgcaagcgactatgatcggcgggcaactcccaagaagaagacatacccgacggag
        a                acgccccattgccagttgactataatggataatttgcagccttggaagcctactatattcatgggcctacag
        g                cctttcggcgcagccccgtcggctcccgctggcgggatttccgcgccccgcctcggccgccggcgccggcgg
                                                                                                 
 Sequence until next stop: 
ATGTAA
 M  * 

 Distance CDS-SECIS: 649 ; UGA-SECIS: 1105

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = KZ686489.1:subseq_155068,101287_ Strand = + Positions = 51940 - 52015
 Found by:  Infernal (score=21.7) Covels (score=26.62)
 Stem2 length = 8   Apical loop length = 15   Insertion in stem2 = 0, 0
 Free Energy = -12.72

         ..(((((((.......(((((((((((((((...............)))))))))))))))...........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuu--u-uuucaugaccggc
         (({(((([(.--....([[((({(((({((......--.........))}))))})))]]).......-...)]))))}))
 target  GGGUGGCAUC--UCCAUGAAGGAGGGGCCCAAAGCC--CUUGUGGGCGGACCUCCCUUGAGCCUGUCU-GAAGGGCCAGCC
                         ****          ^^^                        ****