_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 6e-78
 Query name: gi|821420686|ref|XP_004286846.2| PREDICTED: glutathione peroxidase 1 [Orcinus orca]
 Query range: 1-206  (total 206)

 Target: /data/www-rg/seblastian_results/373950136/tempfiles/temptarget.fasta
 Chromosome: KZ686378.1:subseq_735042,100842_ Strand: +
 Positions:
 -Exon 1  49952        50212
 -Exon 2  50489        50845

 Redox box: no

Query   MCAAQRSAAALAAAAPRSVYAFSARPLAGGEPVNLGSLRGKVLLIENVASLUGTTVRDYTQMNDLQRRLGPRGLVVLGFPCNQFGHQ <---Intron--
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| <   276bp   
Target  MCAAQRSAAALAAAAPRSVYAFSARPLAGGEPVNLGSLRGKVLLIENVASLUGTTVRDYTQMNDLQRRLGPRGLVVLGFPCNQFGHQ             
        atggcctgggcggggcctgtgttgcccggggcgatgtccgagccagaggtctgaagcgtacaagcccccgccgcggcgtctactgcc             
        tgccagcccctcccccgctactccgctcggactatgctggattttaatcctggcctgaacataataggtgcggttttgtcgaatgaa             
        gtctgcggccgtagcgcggccctgtggccggcgcggctgcgggctgtgagcacatcgcccggtcgggccgcgcgcgcccgccgtgtg             
                                                           *                                                

Query   -> ENAKNEEILNCLKYVRPGGGFEPNFMLFEKCEVNGEKAHPLFTFLREALPTPSDDATALMTDPKFITWSPVCRNDVAWNFEKFLVGPDGVPVRRYSR
         > |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Target     ENAKNEEILNCLKYVRPGGGFEPNFMLFEKCEVNGEKAHPLFTFLREALPTPSDDATALMTDPKFITWSPVCRNDVAWNFEKFLVGPDGVPVRRYSR
           gagaaggacatcatgccgggtgcatactgatggaggagccctatccggccacagggagcaagcataattcgtcagggtatgatcggcgggcgcatac
           aacaaaattagtaatgcgggtacattttaagatagaacacttcttgactcccgaacccttcacattcgcctggaatcgataatttgcagtctggagg
           atcgcggcgtccgcaaaccgcgcccgccggcggtcggatgcccctggtgcgttccctccgaccgcccgtggcccctcgccggcggcactgcacgccc
                                                                                                            

Query   RFLTIDIEPDIEALLSQGPSCA
        ||||||||||||||||||||||
Target  RFLTIDIEPDIEALLSQGPSCA
        ctcaagagcgaggcctcgcatg
        gttctatacatacttcagcggc
        ctgccccgtccatggtggcctc
                              
 Sequence until next stop: 
TAG
 * 

 Distance CDS-SECIS: 48 ; UGA-SECIS: 510

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = KZ686378.1:subseq_735042,100842_ Strand = + Positions = 50894 - 50968
 Found by:  Infernal (score=35.06) Covels (score=30.43)
 Stem2 length = 12   Apical loop length = 8   Insertion in stem2 = 1, 0
 Free Energy = -28.7

         ..(((((((.......((((((((((.(((((...............)))))))))))))))..........)))))))..
 model   uucggucaugcgUuaAUGAcGgccug-gcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuu-u-uuucaugaccggc
         ..(((((((((.....{[[{((((((.((((((.......-----.))))))))))))}]]}......-.)))))))))..
 target  CUGGGGAUUUUAUCCAUGAAGGUGUUUCCUCUAAACCUGC-----AUGGAGGAACACCAGAUGUCCAG-GAAAAUCCCCCG
                         ****             ^^                       ****