Results

In the next tables we show the prediction of the selenoproteins we have found in the genome of Mus spicilegus. In order to correctly interprete the table we have used some symbols:

	Homo sapiens
	Mus musculus
	Found in Mus spicilegus
	Not found in Mus spicilegus

PROTEIN	SPECIES	RESIDUE	BLAST	EXONERATE	SCAFFOLD	GENE LOCATION	T_COFFEE	SECIS	SEBLASTIAN
Glutathione peroxidase (GPx)
GPx1		Sec			QGOO01037041.1	692414-693238(+)
GPx2		Sec			QGOO01037198.1	1531742-1534452(-)
GPx3		Sec			QGOO01037355.1	741345-743898(+)
GPx4		Sec			QGOO01000322.1	2828936-2829448(-)
GPx5		Cys			QGOO01037229.1	484179-489423(+)
GPx6		Cys			QGOO01037229.1	458305-465037(-)
GPx7		Cys			QGOO01037308.1	609503-615282(-)
GPx8		Cys			QGOO01037047.1	1257868-1261085(-)
Methionine sulfoxide reductase A (MSRA)
MsrA		Cys			QGOO01037280.1	1546765-1873507(-)
15kDa Selenoprotein (Sel15)
Sel15		Sec			QGOO01036624.1	122868-143295(-)
Selenoprotein H (SelH)
SelH		Sec			QGOO01037024.1	675750-676319(+)
Selenoprotein I (SelI)
SelI		Sec			QGOO01000252.1	1778146-1812710(+)
Selenoprotein K (SelK)
SelK		Sec			QGOO01037347.1	3466870-3467009(+)
Selenoprotein M (SelM)
SelM		Sec			QGOO01036943.1	1048296-1050428(-)
Selenoprotein N (SelN)
SelN		Sec			QGOO01037443.1	1526462-1538550(-)
Selenoprotein S (SelS)
SelS		Sec			QGOO01037411.1	3014694-3022181(+)
Selenoprotein T (SelT)
SelT		Sec			QGOO01011872.1	1853-2374(+)
Selenoprotein W (SelW)
SelW1		Sec			QGOO01037024.1	678224-678728(-)		--	--
SelW2		Cys			QGOO01036902.1	645332-646010(-)
Thioredoxin reductase (TR)
TR1		Sec			QGOO01036908.1	729327-746852(-)
TR2		Sec			QGOO01037360.1	3192341-3233314(+)
TR3		Sec			QGOO01036677.1	285813-316627(-)
Iodothyronine deiodinase* (DIO)
DIO1		Sec			QGOO01037358.1	3339723-3353684(+)
DIO2		Sec			QGOO01037505.1	610263-619085(-)
DIO3		Sec			QGOO01037276.1	1160847-1161635(+)
Selenoprotein O* (SelenoO)
SelenoO		Sec			QGOO01037475.1	6531516-6542186(+)
Selenoprotein P* (SelenoP)
SelenoP		Sec			QGOO01036879.1	1024230-1029249(-)
Selenoprotein U* (SelU)
SelU1		Cys			QGOO01037352.1	200574-210245(+)
SelU2		Cys			QGOO01037138.1	824854-848166(-)
SelU3		Cys			QGOO01037438.1	4173757-4175723(-)
Methionine-R-sufoxide reductase* (MSRB)
MSRB1		Sec			QGOO01037226.1	826154-829651(+)
MSRB2		Cys			QGOO01000487.1	681473-697096(-)
MSRB3		Cys			QGOO01037410.1	2343247-2407785(-)

* This proteins have been found in SelenoDB 2.0. This database is not anotated manually, so it may contain errors.

The next table shows the Selenoprotein prediction in the genes that code fot the selenocystein machinery:

PROTEIN	SPECIES	RESIDUE	BLAST	EXONERATE	SCAFFOLD	GENE LOCATION	T_COFFEE	SECIS	SEBLASTIAN
Selenocysteine synthase* (SecS)
SecS		Cys			QGOO01037047.1	331523-357526(+)
Eukaryotic elongation factor* (eEFsec)
eEFsec		Cys			QGOO01037345.1	713588-903899(+)
Phosphoseryl-tRNA kinase* (PSTK)
PSTK		Cys			QGOO01037476.1	268303-278678(+)
tRNA Sec 1 associated protein 1* (SECp43)
SECp43		Cys			QGOO01036893.1	476238-490643(+)
SECIS binding protein 2* (SBP2)
SBP2		Cys			QGOO01037436.1	721880-752207(+)
Selenophosphate synthetase* (SPS)
SPS1		Thr			QGOO01037147.1	1782612-1804505(+)
SPS2		Sec			QGOO01036418.1	80631-81878(+)

* This proteins have been found in SelenoDB 2.0. This database is not anotated manually, so it may contain errors.