RESULTS

The following table shows, for each query its tblastn output, the exonerate prediction for the protein, the T-Coffee alignment for the best prediction and the SECIS element prediction by Seblastian. The legend used is showed below:

Sec and Cys

Selenoproteins

This table shows the presence of the genes encoding selenoproteins:

Protein Species BLAST Contig Initial position Final position Sense Exonerate Tcoffee SECIS SECIS Image Protein Sequence
DIO Family
DIO1
CM007939.1
51081302
51082379
(+)
DIO2a_1
CM007953.1
22517013
22521454
(-)
DIO2a_2
CM007953.1
53671818
53672525
(+)
DIO2a_3
CM007959.1
76409543
76414065
(+)
DIO3a_1
CM007938.1
73208279
73209058
(-)
DIO3a_2
CM007942.1
31045337
31046110
(+)
DIO3b
Computer Man
Computer Man
GPx
GPx1a_1
CM007941.1
52376226
52377295
(-)
GPx1a_2
CM007941.1
33364037
33364311
(+)
GPx1b_1
CM007951.1
45465011
45465967
(+)
GPx1b_2
CM007951.1
64697418
64698282
(-)
GPx2_1
CM007953.1
40384605
40384751
(-)
GPx2_2
CM007959.1
58025598
58033514
(+)
GPx3a_1
CM007959.1
2490027
2497231
(-)
GPx3a_2
CM007948.1
75455324
75459118
(+)
GPx3b
CM007935.1
82402030
82408677
(+)
GPx4a
CM007935.1
17140897
17140989
(-)
GPx4b_1
CM007939.1
57547228
57552243
(-)
GPx4b_2
CM007942.1
71362515
71363325
(+)
GPx7
CM007939.1
78659661
78668304
(+)
GPx8_1
CM007945.1
75815261
75816465
(+)
GPx8_2
CM007940.1
3794680
3795388
(-)
MSRB
MSRB1a_1
MSJN01022804.1
27257
34948
(+)
MSRB1a_2
CM007947.1
51148340
51160998
(+)
MSRB1b
CM007954.1
20339667
20340437
(-)
MSRB2_1
CM007945.1
14399111
14400755
(-)
MSRB2_2
CM007949.1
10195145
10197063
(-)
MSRB3_1
MSJN01034164.1
115871
131841
(-)
MSRB3_2
MSJN01119661.1
1123
23569
(-)
MsrA
MsrA_1
CM007959.1
45713062
45751630
(-)
MsrA_2.1
CM007942.1
20995730
21099307
(+)
MsrA_2.2
CM007938.1
62724219
62807722
(+)
Sel15
Sel15_1
CM007942.1
48087557
48110374
(-)
Sel15_2
CM007962.1
31074651
31083743
(+)
SELENOE
SELENOE_1
CM007945.1
70457115
70462733
(+)
SELENOE_2
CM007940.1
40412946
40414495
(+)
SELENOH
SELENOH_1
CM007959.1
28194282
28194611
(-)
SELENOH_2
CM007948.1
55339436
55339513
(-)
SELENOI
SELENOI_1
CM007942.1
465206
501459
(+)
SELENOI_2
CM007941.1
62051509
62045309
(-)
SELENOJ
SELENOJ_1
CM007942.1
79784582
79791603
(+)
SELENOJ_2
CM007945.1
18681130
18688443
(-)
SELENOK
SELENOK
CM007943.1
33285890
33286031
(-)
SELENOL
SELENOL
CM007938.1
60608316
60611049
(-)
SELENOM
SELENOM_1
CM007945.1
56002467
56002741
(-)
SELENOM_2
CM007940.1
26868516
26868765
(-)
SELENON
SELENON
CM007953.1
51256096
51261373
(-)
SELENOO1-2
SELENOO1-2_1
CM007936.1
67691605
67698540
(+)
SELENOO1-2_2
CM007955.1
11042866
11048719
(-)
SELENOO1-2_3
CM007935.1
38392876
38400756
(+)
SELENOP
SELENOP_1.1
CM007942.1
59856457
59858124
(+)
SELENOP_1.2
CM007962.1
20547094
20548042
(-)
SELENOP_2.1
CM007940.1
37993124
37994538
(+)
SELENOP_2.2
CM007945.1
68192785
68197404
(+)
SELENOS
SELENOS
CM007960.1
35267112
35270995
(-)
SELENOT
SELENOT1_1
CM007962.1
28906835
28909883
(-)
SELENOT1_2
CM007942.1
50428102
50430307
(+)
SELENOT1b
Computer Man
SELENOT2
CM007959.1
15703119
15704308
(-)
SELENOU
SELENOU1a_1
CM007950.1
16311869
16316108
(+)
SELENOU1a_2
CM007935.1
79681676
79686732
(+)
SELENOU1a_3
CM007957.1
25202962
25209394
(+)
SELENOU2
CM007945.1
68069553
68071421
(+)
SELENOU3
CM007941.1
35629555
35631435
(-)
SELENOW
SELENOW_1.1
CM007947.1
46534811
46541162
(+)
SELENOW_1.2
CM007946.1
80085425
80090315
(+)
SELENOW_2
Computer Man
SELENOW_3
CM007963.1
30483359
30483787
(-)
TXNRD
TXNRD2_1
CM007940.1
32406252
32427023
(+)
TXNRD2_2
CM007945.1
61835027
61864335
(+)
TXNRD3_1
CM007941.1
67297738
67320876
(+)
TXNRD3_2
CM007951.1
29392144
29422500
(-)

Selenoprotein Machinery

This table shows the presence of the genes encoding selenoprotein machinery and selenium metabolism:

Protein Species BLAST Contig Initial position Final position Sense Exonerate Tcoffee SECIS SECIS Image Protein Sequence
SecS
SecS_1
CM007943.1
25765849
25770921
(-)
SecS_2
CM007955.1
28278487
28313985
(+)
SBP2
SBP2
CM007940.1
17517527
17519600
(-)
PSTK
PSTK
CM007935.1
84101333
84157183
(-)
eEFsec
eEFsec
CM007941.1
51272165
51282180
(+)
SEPHS
SEPHS1_1
CM007935.1
31482276
31492129
(+)
SEPHS1_2
CM007936.1
60868651
60872807
(+)
SEPHS2
CM007943.1
67210585
67230174
(+)
SECp43
SECp43_1
CM007948.1
5411856
5414949
(+)
SECp43_2.1
CM007962.1
18052468
18055398
(+)
SECp43_2.2
CM007942.1
62191322
62197635
(-)

Human Biology 2017-2018
Company I , Edo A , Murciano G , Rodríguez A
Computer Man