Results


Here is shown the results of selenoprotein prediction in the genome Paroedura picta.

Selenoproteins

Protein
Query
Residue
Scaffold
Initial position
Final position
Strand
tblastn
tcoffee
seblastian
Sel15
U
BDOT02000186.1
31579
23776
(-)
GPx1
U
BDOT02000003.1
60204402
60207790
(+)
GPx2
U
BDOT02000002.1
64425158
64421492
(-)
GPx3
U
-
-
-
-
GPx4
U
-
-
-
-
GPx3
U
-
-
-
-
GPx5
C
-
-
-
-
GPx7
C
-
-
-
-
GPx8
C
-
-
-
-
DI1
U
BDOT02000004.1
62776129
62779823
(+)
DI2
U
BDOT02000002.1
152754575
152755141
(+)
DI3
U
BDOT02000002.1
139297552
139298118
(+)
SelV
U
-
-
-
-
-
-
-
SelH
U
BDOT02000002.1
66858577
66861550
(+)
SelT
U
BDOT02000008.1
71613502
71621794
(+)
SelW1
U
BDOT02000006.1
103372041
103369852
(-)
SelM
U
BDOT02000013.1
31514638
31518378
(+)
SelO
U
BDOT02000220.1
1791
14826
(+)
TR1
U
BDOT02000006.1
22477230
22446150
(-)
TR2
U
BDOT02000013.1
38208946
38169950
(-)
TR3
U
BDOT02000003.1
36584531
36538684
(-)
SelK
U
-
-
-
-
SelI
U
BDOT02000001.1
159818412
159870774
(+)
SelN
U
BDOT02000819.1
18488
24038
(+)
SelP
U
BDOT02000004.1
55003144
55009848
(+)
SelR1
U
BDOT02000018.1
850450
849589
(-)
SelS
U
-
-
-
-
SelW2
C
BDOT02000015.1
16468529
16471417
(+)
MsrA
C
BDOT02000001.1
156627289
156493686
(-)
SelR2
C
BDOT02000006.1
46281524
46281420
(-)
SelR3
C
BDOT02000006.1
46329497
46281348
(-)
SelU1
C
BDOT02000008.1
7978174
7987922
(+)
SelU2
C
BDOT02000007.1
49531139
49500348
(+)
SelU3
C
-
-
-
-



Machinery

Protein
Query
Residue
Scaffold
Initial position
Final position
Strand
tblastn
tcoffee
seblastian
SPS1
C
BDOT02000006.1
71965909
71991116
(+)
SPS2
U
BDOT02000003.1
162212094
162203950
(-)
PSTK
C
BDOT02000008.1
39161707
39164359
(-)
SecS
C
BDOT02000010.1
7935540
7967254
(+)
SBP2
C
BDOT02000007.1
51705487
51727458
(+)
SECp43
C
BDOT02000006.1
87807075
94510502
(-)
eEFsec
C
BDOT02000003.1
39170152
39295424
(+)