Command line: [exonerate -m p2g --showtargetgff -q protbo.fa -t T.cruzi_tall.fa --exhaustive yes]
Hostname: [ws101156.aulescm.upf.edu]

C4 Alignment:
------------
         Query: gi|70870239|gb|AAHK01001632.1|:subseq(1423,2260) Trypanosoma cruzi strain CL Brener tcruzi_1047053508727, whole genome shotgun sequence:[translate(1)]
        Target: gi|70870239|gb|AAHK01001632.1|:subseq(1423,2260) Trypanosoma cruzi strain CL Brener tcruzi_1047053508727, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 461
   Query range: 0 -> 89
  Target range: 1260 -> 993

    1 : MetProTyrValAlaAsnGlyArgValValAspSerLysProPheSerLeuValAspPhePh :   21
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
        MetProTyrValAlaAsnGlyArgValValAspSerLysProPheSerLeuValAspPhePh
 1260 : ATGCCGTACGTTGCGAACGGCAGGGTCGTTGACTCGAAGCCGTTTAGTCTCGTCGACTTTTT : 1200

   22 : eLeuSerIleLeuArgLeuMetTrpLeuPhePheAlaThrLeuValSerSerGluProValS :   42
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
        eLeuSerIleLeuArgLeuMetTrpLeuPhePheAlaThrLeuValSerSerGluProValS
 1199 : TCTCTCCATTCTGCGTCTCATGTGGCTGTTTTTTGCCACTCTTGTTTCCTCCGAGCCCGTCT : 1137

   43 : erGlnHisValGlnGluTyrArgSerThrThrArgIleValProPheGlyGlyGlyArgSer :   62
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
        erGlnHisValGlnGluTyrArgSerThrThrArgIleValProPheGlyGlyGlyArgSer
 1136 : CGCAACACGTGCAGGAGTACAGATCAACAACGCGAATTGTTCCTTTCGGTGGTGGTCGCAGC : 1077

   63 : ValGlyHisAlaProArgGlyProAsnIleHisGlyLeuProLysGlySerLeuThrGlyGl :   83
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
        ValGlyHisAlaProArgGlyProAsnIleHisGlyLeuProLysGlySerLeuThrGlyGl
 1076 : GTTGGTCACGCTCCGCGTGGGCCCAACATTCACGGACTTCCAAAGGGCTCACTTACCGGCGG : 1014

   84 : yCysAlaThrGlyUnkArg :   89
        |||||||||||||   |||
        yCysAlaThrGly***Arg
 1013 : ATGTGCCACTGGCTGACGT :  994

vulgar: gi|70870239|gb|AAHK01001632.1|:subseq(1423,2260) 0 89 . gi|70870239|gb|AAHK01001632.1|:subseq(1423,2260) 1260 993 - 461 M 89 267
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2010-03-09
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|70870239|gb|AAHK01001632.1|:subseq(1423,2260)	exonerate:protein2genome:local	gene	994	1260	461	-	.	gene_id 1 ; sequence gi|70870239|gb|AAHK01001632.1|:subseq(1423,2260) ; gene_orientation .
gi|70870239|gb|AAHK01001632.1|:subseq(1423,2260)	exonerate:protein2genome:local	cds	994	1260	.	-	.	
gi|70870239|gb|AAHK01001632.1|:subseq(1423,2260)	exonerate:protein2genome:local	exon	994	1260	.	-	.	insertions 0 ; deletions 0
gi|70870239|gb|AAHK01001632.1|:subseq(1423,2260)	exonerate:protein2genome:local	similarity	994	1260	461	-	.	alignment_id 1 ; Query gi|70870239|gb|AAHK01001632.1|:subseq(1423,2260) ; Align 1261 1 267
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis